Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012571.1 Corchorus capsularis cultivar CVL-1 contig12592, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32834

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2246--2720
51
9.4
50
78
3
477
41
5
15
37
1.69
2255--2706
101
4.5
100
92
1
715
42
4
16
37
1.69
2248--2706
203
2.3
201
91
1
731
42
4
16
36
1.68
3392--3872
55
9.1
55
88
8
710
51
7
16
24
1.70
3570--3644
21
3.3
21
67
22
62
52
8
17
22
1.71
3616--3810
29
7.0
29
63
22
105
49
7
16
26
1.73
3389--3872
102
4.6
103
87
7
686
51
7
16
24
1.69
3392--3872
157
3.0
158
86
9
651
51
7
16
24
1.70
4107--4445
43
7.7
42
77
10
281
54
6
21
17
1.65
4088--4460
22
17.0
22
73
13
229
54
5
20
18
1.64
4324--4379
15
3.9
15
74
9
62
57
3
21
17
1.55
4249--4460
116
1.8
114
82
7
268
55
7
19
17
1.66
6076--6108
17
2.0
17
88
5
50
39
12
6
42
1.67
15852--15894
22
2.0
22
100
0
86
34
32
9
23
1.87
16676--16873
108
1.8
109
84
7
278
40
8
9
40
1.68
17706--18149
167
2.7
165
87
2
604
39
15
15
29
1.88
18213--18239
3
9.0
3
100
0
54
33
0
0
66
0.92
20570--20644
36
2.1
35
97
2
141
18
20
13
48
1.81
23272--23377
31
3.5
30
83
7
126
48
12
16
22
1.80
23496--23575
31
2.6
32
90
6
128
32
13
12
41
1.82
23584--23611
2
14.0
2
100
0
56
50
0
0
50
1.00
23732--23757
3
8.7
3
100
0
52
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23843--24714
21
41.5
21
77
10
633
40
21
8
29
1.82
23846--24714
63
13.8
63
78
6
764
41
21
8
29
1.82
23843--24714
42
20.8
42
79
7
740
40
21
8
29
1.82
25040--25125
29
3.0
30
78
11
90
45
9
4
40
1.57
25250--25288
19
2.0
20
85
10
53
53
7
2
35
1.43
27628--27665
20
1.9
20
94
0
67
26
0
13
60
1.33
29061--29096
16
2.3
16
90
4
56
61
13
8
16
1.56
30522--30566
12
3.8
12
82
11
56
77
0
15
6
0.96

Tables:   1

The End!