Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012572.1 Corchorus capsularis cultivar CVL-1 contig12593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51580

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10131--10438
151
2.0
151
96
0
562
51
5
8
34
1.55
24299--24323
1
25.0
1
100
0
50
100
0
0
0
0.00
26978--27016
20
2.0
20
85
10
53
28
10
38
23
1.87
28408--28433
4
6.5
4
100
0
52
76
0
0
23
0.78
30669--30693
1
25.0
1
100
0
50
0
0
0
100
0.00
32287--32359
29
2.5
29
100
0
146
21
13
27
36
1.92
36937--37000
28
2.3
28
94
2
112
56
10
7
25
1.60
38501--38604
33
3.2
32
75
6
93
26
9
19
44
1.81
38620--38693
33
2.2
33
90
0
121
35
10
17
36
1.85
39084--39142
30
2.0
30
83
6
75
33
13
27
25
1.93
40323--40357
2
17.5
2
93
0
61
48
48
0
2
1.16
43365--43436
29
2.5
28
84
11
83
37
30
12
19
1.89
43868--43945
29
2.6
30
76
15
90
16
14
29
39
1.88
47088--47118
15
2.1
15
93
0
53
38
0
0
61
0.96
47961--48030
19
3.7
19
79
7
88
35
5
18
40
1.75
48625--48726
49
2.1
49
86
0
141
38
23
16
21
1.93
48671--49002
154
2.1
155
91
0
531
40
22
17
19
1.91
48931--49038
35
3.0
36
78
5
130
39
28
14
16
1.88
49031--49137
53
2.0
54
92
1
180
32
23
16
27
1.96
48840--49209
124
3.0
123
71
14
359
37
23
17
21
1.94
49083--49237
71
2.2
71
92
0
256
36
21
20
21
1.95
50641--50680
13
3.1
13
96
0
71
2
15
0
82
0.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51002--51109
45
2.4
45
87
3
155
36
18
7
37
1.79
51111--51165
17
3.2
18
80
14
55
7
14
1
76
1.08
51213--51251
18
2.2
18
90
4
62
0
20
0
79
0.73
51532--51578
2
23.5
2
91
0
76
46
0
2
51
1.13

Tables:   1

The End!