Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012576.1 Corchorus capsularis cultivar CVL-1 contig12597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54490

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
121--178
23
2.7
21
76
19
66
53
0
0
46
1.00
12819--12910
24
3.8
24
66
8
62
19
18
25
36
1.94
16147--16202
24
2.4
23
88
5
85
10
8
12
67
1.41
16532--16612
27
3.0
27
90
0
117
20
27
28
23
1.99
19305--19343
20
2.0
20
89
0
60
69
2
10
17
1.28
21252--21276
13
1.9
13
100
0
50
80
0
0
20
0.72
21947--21972
2
13.0
2
100
0
52
50
50
0
0
1.00
27473--27549
33
2.3
33
79
0
82
24
7
22
45
1.78
27992--28049
30
1.9
30
93
6
100
29
18
31
20
1.97
28094--28127
8
4.0
8
92
7
50
26
11
47
14
1.79
28102--28138
19
2.0
18
89
5
56
29
13
40
16
1.86
37997--38097
50
2.0
50
100
0
202
31
13
14
39
1.86
44592--44628
18
2.1
18
100
0
74
0
32
43
24
1.55
44695--44724
15
2.0
15
100
0
60
60
0
20
20
1.37
46770--46803
11
3.2
10
84
15
50
29
2
17
50
1.61
53845--53878
11
3.2
10
84
15
50
29
2
17
50
1.61

Tables:   1

The End!