Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012578.1 Corchorus capsularis cultivar CVL-1 contig12599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115379

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5934--5985
26
2.0
26
100
0
104
19
7
19
53
1.68
6148--6177
12
2.4
12
94
5
51
26
16
10
46
1.78
6556--6841
142
2.0
144
95
1
513
46
10
23
19
1.80
11294--11378
42
2.0
42
95
0
152
16
24
31
27
1.96
18071--18118
3
16.0
3
100
0
96
66
0
0
33
0.92
34971--35022
21
2.5
21
70
0
50
34
25
7
32
1.84
38946--38994
21
2.3
21
82
0
62
34
4
10
51
1.55
44871--44943
31
2.4
31
81
6
87
30
17
20
31
1.96
46332--46398
31
2.2
31
83
2
82
34
20
13
31
1.92
51331--51394
9
7.0
9
74
10
58
29
0
0
70
0.88
52841--52873
16
2.1
16
100
0
66
39
30
6
24
1.79
54365--54427
33
1.9
33
96
0
117
22
12
12
52
1.73
54559--54620
32
1.9
32
87
6
90
25
12
9
51
1.70
54275--54632
194
1.9
192
92
0
583
25
14
12
47
1.79
58028--58085
28
2.1
28
100
0
116
56
6
13
22
1.61
63144--63187
22
2.0
22
95
0
79
9
20
13
56
1.64
63313--63339
13
2.1
13
100
0
54
14
22
7
55
1.64
65550--65612
27
2.3
29
76
18
71
68
1
28
1
1.08
66209--66731
35
14.8
35
87
5
705
38
10
18
32
1.85
66209--66726
178
2.9
176
87
5
708
38
10
18
32
1.85
66203--66731
213
2.5
209
88
5
798
38
10
18
32
1.85
71471--71531
30
2.0
30
90
6
97
18
34
19
27
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71973--72036
33
1.9
33
83
0
83
43
20
9
26
1.82
72241--72273
15
2.3
15
89
5
50
66
3
6
24
1.28
102222--102304
32
2.6
32
76
3
96
40
22
18
18
1.91
105974--106006
15
2.2
15
89
10
50
66
6
27
0
1.15
106679--106788
32
3.4
32
85
0
148
30
19
30
20
1.97
115194--115236
12
3.5
12
93
6
77
25
23
16
34
1.95

Tables:   1

The End!