Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012580.1 Corchorus capsularis cultivar CVL-1 contig12601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46826

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2622--2985
156
2.3
155
81
7
425
34
18
16
30
1.93
11183--11231
25
2.0
25
84
8
64
51
2
6
40
1.38
19968--19994
2
13.5
2
100
0
54
48
0
0
51
1.00
24264--24392
63
2.0
63
98
0
249
33
24
13
29
1.93
28772--28797
2
13.0
2
100
0
52
0
0
50
50
1.00
29034--29074
21
2.0
21
85
0
55
19
34
29
17
1.94
29100--29147
21
2.3
21
75
3
53
16
27
37
18
1.92
33012--33214
101
2.0
103
89
3
313
36
5
24
33
1.80
36440--36489
2
26.5
2
80
11
61
52
0
0
48
1.00
36740--36805
31
2.1
32
91
2
107
37
21
12
28
1.89
38081--38112
2
16.0
2
100
0
64
50
0
0
50
1.00
43223--43267
18
2.4
18
81
7
54
55
8
0
35
1.31
45972--46013
20
2.1
20
90
0
66
4
23
26
45
1.73

Tables:   1

The End!