Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012584.1 Corchorus capsularis cultivar CVL-1 contig12605, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27162

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1934--1962
2
15.0
2
92
7
51
51
0
0
48
1.00
3770--3851
40
2.1
39
90
2
128
42
17
12
28
1.84
3938--3964
13
2.1
13
100
0
54
40
7
37
14
1.74
5917--6191
109
2.5
109
92
4
437
38
10
1
49
1.47
7179--7212
16
2.1
16
100
0
68
44
11
17
26
1.83
13946--14380
229
1.9
229
98
0
843
30
17
17
35
1.93
18236--18299
27
2.2
29
81
13
87
15
21
0
62
1.32
18372--18451
35
2.2
36
89
10
121
21
22
5
51
1.67
18407--18531
22
5.8
21
81
12
87
22
20
5
52
1.67
18407--18533
44
2.9
45
76
12
131
22
21
5
51
1.68
18492--18676
56
3.3
56
78
11
168
22
20
5
51
1.68
18705--18758
26
2.1
26
93
6
92
27
14
3
53
1.58
18711--18766
26
2.2
26
87
6
78
26
17
3
51
1.62
18732--18814
32
2.5
33
81
13
107
22
20
3
53
1.61
18820--18897
40
1.9
41
92
2
131
21
20
3
53
1.61
18813--18930
40
2.9
41
85
6
107
22
22
5
50
1.70
22378--22454
40
1.9
39
84
7
102
38
16
22
22
1.93
22426--22615
50
4.1
43
76
15
123
38
17
16
27
1.91
22451--22647
46
4.2
45
82
10
236
35
17
18
28
1.94

Tables:   1

The End!