genome.fa.s12587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012587.1 Corchorus capsularis cultivar CVL-1 contig12608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103332

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3590--3657	27	2.5	27	79	11	77	27	16	23	32	1.96
8067--8134	27	2.5	28	81	9	79	29	16	22	32	1.95
14582--14680	22	4.5	22	76	9	85	43	15	8	33	1.76
14582--14680	44	2.2	44	80	7	128	43	15	8	33	1.76
14752--14826	22	3.4	21	82	10	89	38	6	20	34	1.78
18303--18415	25	4.3	26	90	7	176	51	10	15	23	1.74
18303--18415	53	2.2	51	93	3	190	51	10	15	23	1.74
21333--21371	21	1.9	20	84	5	51	33	5	0	61	1.18
21588--21641	27	2.0	28	92	3	92	51	7	31	9	1.61
29114--29163	18	3.1	17	76	18	54	48	10	6	36	1.61
29114--29173	31	2.0	31	96	3	113	48	8	6	36	1.60
31829--31913	33	2.6	33	90	1	127	16	38	32	11	1.85
31965--32035	33	2.2	33	87	5	99	11	26	42	19	1.85
34919--34961	23	2.0	23	81	9	54	4	37	16	41	1.69
37402--37435	17	2.0	17	94	0	59	26	41	8	23	1.83
37816--37978	55	3.0	55	90	0	245	20	27	18	33	1.96
38023--38063	21	2.0	21	85	9	57	4	31	17	46	1.69
44826--44850	1	25.0	1	100	0	50	100	0	0	0	0.00
47347--47377	16	1.9	16	93	0	53	29	0	22	48	1.51
48628--49616	437	2.3	438	82	4	1181	31	14	12	41	1.83
51857--51891	17	2.1	17	88	0	52	17	8	2	71	1.23
52988--53013	7	3.7	7	100	0	52	46	11	15	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54957--54986	9	3.2	9	95	4	51	86	0	13	0	0.57
54954--54983	14	2.1	14	93	0	51	90	0	10	0	0.47
55454--55488	18	1.9	18	100	0	70	40	5	31	22	1.78
58712--58758	3	15.7	3	100	0	94	65	0	0	34	0.93
58830--58906	34	2.2	34	86	11	104	58	9	11	20	1.60
59800--59843	21	2.1	21	86	0	61	25	25	13	36	1.92
59889--59965	33	2.3	33	88	4	111	22	42	25	9	1.82
59914--59965	16	3.2	16	70	5	50	23	44	25	7	1.79
60071--60188	33	3.6	33	85	3	141	12	37	36	13	1.83
60071--60217	66	2.2	65	81	8	156	11	36	36	15	1.84
60102--60236	33	4.2	33	80	12	129	11	33	37	17	1.86
65985--66315	166	2.0	167	85	0	448	39	16	14	29	1.88
65434--66349	456	2.0	456	96	0	1710	39	14	16	29	1.89
66371--66458	45	2.0	45	88	0	131	26	20	19	34	1.96
66657--66694	18	2.1	18	85	9	51	47	2	0	50	1.15
71476--71511	17	2.2	17	90	9	58	19	2	16	61	1.47
75837--75885	21	2.3	21	100	0	98	28	12	8	51	1.68
79708--79750	2	23.0	2	81	13	56	51	2	0	46	1.13
85530--85581	3	17.3	3	82	7	52	38	25	0	36	1.56
85530--85561	15	2.1	15	100	0	64	40	25	0	34	1.56
96751--96809	12	4.8	12	97	2	109	25	23	15	35	1.94
101852--101893	21	2.0	21	86	9	59	35	0	50	14	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102249--102273	1	25.0	1	100	0	50	100	0	0	0	0.00
102905--102971	31	2.2	31	89	5	102	49	11	16	22	1.78
103090--103230	31	4.6	31	81	3	151	31	16	12	40	1.85
103117--103230	60	1.9	60	83	3	149	30	16	12	40	1.85

Tables:   1

The End!