Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012588.1 Corchorus capsularis cultivar CVL-1 contig12609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26034

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156--210
2
28.0
2
82
10
60
43
1
3
50
1.30
281--325
18
2.4
18
81
7
54
55
8
0
35
1.31
788--821
14
2.5
14
90
4
52
55
5
0
38
1.24
1041--1111
3
23.7
3
100
0
142
33
0
0
66
0.92
1172--1281
31
3.6
31
81
2
125
42
10
14
31
1.80
1411--1477
31
2.2
31
92
5
111
20
17
11
49
1.79
4557--4596
20
2.1
19
85
4
53
60
2
5
32
1.32
5110--5172
12
5.2
12
70
18
51
47
0
3
49
1.17
8677--8721
19
2.4
19
88
3
65
15
4
24
55
1.59
8690--8731
19
2.3
19
88
8
61
16
7
21
54
1.65
9588--9636
16
3.1
16
72
21
57
10
24
34
30
1.89
9674--9705
15
2.1
15
94
0
55
9
6
59
25
1.52
11403--11451
22
2.2
22
85
0
62
32
2
24
40
1.67
11410--11452
22
2.0
22
90
0
68
32
0
25
41
1.56
12066--12190
66
1.9
66
100
0
250
35
33
17
13
1.89
13379--13459
34
2.4
34
85
4
103
18
22
17
41
1.90
25790--25872
33
2.5
33
79
12
100
33
10
10
44
1.74

Tables:   1

The End!