Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012589.1 Corchorus capsularis cultivar CVL-1 contig12610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69437

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5104--5142
6
6.3
6
83
16
53
33
17
0
48
1.48
5109--5140
14
2.2
15
94
5
57
31
18
0
50
1.48
5100--5140
20
2.2
18
91
8
64
31
19
0
48
1.49
5140--5171
16
2.0
16
100
0
64
43
6
12
37
1.68
5246--5400
70
2.2
70
89
2
231
36
12
0
50
1.45
12914--13224
110
2.8
111
82
6
317
24
20
23
31
1.98
12994--13224
110
2.1
110
86
2
331
23
20
25
30
1.99
15281--15318
12
3.2
12
92
0
58
50
0
34
15
1.45
31618--31694
31
2.6
30
95
4
138
51
11
22
14
1.74
34873--34930
29
2.0
29
100
0
116
31
24
6
37
1.82
45970--45996
7
3.9
7
100
0
54
44
0
11
44
1.39
47829--47868
14
2.9
14
84
0
53
30
12
22
35
1.91
48108--48137
15
1.9
16
93
6
53
50
0
0
50
1.00
48597--48632
2
18.0
2
100
0
72
50
0
0
50
1.00
49734--49772
20
1.9
20
84
5
51
35
10
10
43
1.73
64975--65015
21
2.0
20
85
4
55
78
0
14
7
0.96

Tables:   1

The End!