Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012590.1 Corchorus capsularis cultivar CVL-1 contig12611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17246

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
839--900
31
2.0
31
81
9
74
30
14
24
30
1.95
907--944
16
2.4
16
91
4
60
36
0
0
63
0.95
4293--4366
31
2.4
31
88
0
112
39
17
25
17
1.91
5094--5126
5
6.6
5
92
0
57
0
21
0
78
0.75
5094--5139
15
3.1
15
84
3
58
0
26
0
73
0.83
7142--7212
9
7.8
9
79
17
67
71
1
0
26
0.94
7142--7220
19
4.3
19
78
15
85
70
1
0
27
0.95
7142--7220
10
8.6
9
79
19
83
70
1
0
27
0.95
8763--9295
105
4.6
118
82
7
644
16
22
25
34
1.95
8800--9245
223
2.0
225
88
0
662
16
22
26
34
1.95
9025--9295
118
2.3
119
86
0
382
17
22
24
35
1.95
9570--9616
18
2.6
18
96
0
85
19
21
36
23
1.95
9712--9758
24
2.0
24
91
0
76
4
29
23
42
1.73
9680--10383
327
2.1
327
94
2
1212
24
20
21
33
1.97
10229--10488
106
2.5
106
94
0
450
23
20
21
35
1.96
10473--10518
24
1.9
24
95
0
83
6
28
23
41
1.79

Tables:   1

The End!