Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012595.1 Corchorus capsularis cultivar CVL-1 contig12616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91282

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
158--184
2
13.5
2
100
0
54
48
0
0
51
1.00
1800--1846
20
2.4
20
82
3
60
12
8
6
72
1.27
2474--2908
167
2.6
166
88
0
645
40
16
14
28
1.88
3445--3477
6
5.7
6
92
7
59
0
12
0
87
0.53
3445--3477
11
2.8
12
95
4
59
0
12
0
87
0.53
3445--3477
17
1.9
17
93
0
57
0
12
0
87
0.53
6570--6712
71
2.0
71
98
0
277
38
13
13
34
1.84
7441--7469
3
10.0
3
92
7
51
68
0
0
31
0.89
9940--10127
99
1.9
100
94
1
333
35
15
9
38
1.81
10763--10801
1
39.0
1
94
0
69
97
0
2
0
0.17
10763--10839
6
13.2
6
95
1
59
81
0
18
0
0.68
10794--10839
3
15.3
3
95
0
83
69
0
30
0
0.89
24469--24500
16
2.0
16
100
0
64
25
6
12
56
1.59
26857--26961
52
2.0
52
100
0
210
22
20
18
38
1.94
35260--35368
31
3.6
31
85
4
143
30
16
11
42
1.83
35436--35494
3
19.7
3
92
0
82
64
6
0
28
1.19
36476--36554
31
2.5
31
87
0
122
34
8
17
39
1.81
36672--36738
31
2.2
29
86
5
89
22
16
10
50
1.75
40129--40178
16
3.1
16
75
13
57
8
30
2
60
1.37
42197--42231
15
2.3
15
100
0
70
20
17
11
51
1.75
44535--44617
41
2.0
41
95
0
148
28
10
24
36
1.89
55499--55525
6
4.5
6
100
0
54
66
14
0
18
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78780--78842
30
2.1
30
93
0
108
63
17
3
15
1.44
85963--85996
16
2.1
16
94
0
59
52
5
8
32
1.56

Tables:   1

The End!