Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012596.1 Corchorus capsularis cultivar CVL-1 contig12617, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55459

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107--135
2
14.5
2
100
0
58
48
0
0
51
1.00
6939--7049
13
8.8
13
67
23
51
42
3
2
51
1.33
6934--7040
41
2.6
42
76
16
102
42
3
2
50
1.34
6942--7068
15
8.5
15
67
20
63
43
3
2
51
1.30
12217--12248
15
2.1
15
94
0
55
15
0
34
50
1.45
28162--28190
2
15.0
2
92
7
51
48
0
0
51
1.00
29649--29680
2
16.0
2
100
0
64
50
0
0
50
1.00
33545--33588
21
2.1
21
83
8
54
18
27
9
45
1.79
33651--33713
32
2.0
32
96
0
117
15
39
28
15
1.89
33789--33882
33
2.9
33
84
4
111
12
32
41
12
1.81
46957--47057
48
2.1
48
96
0
184
50
14
9
24
1.74
47187--47232
22
2.1
22
84
8
58
47
15
10
26
1.78
55114--55143
15
2.0
15
93
0
51
43
26
10
20
1.83

Tables:   1

The End!