Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012597.1 Corchorus capsularis cultivar CVL-1 contig12618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45271

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4655--4692
3
12.7
3
100
0
76
68
0
31
0
0.90
15741--15772
6
5.3
6
96
0
55
28
0
53
18
1.45
20350--20399
17
2.9
17
77
11
57
48
4
12
36
1.59
26374--26438
30
2.1
31
91
2
105
29
20
3
47
1.65
26551--26635
22
3.9
22
90
0
116
35
15
15
34
1.89
26552--26635
44
1.9
44
90
0
132
35
15
14
34
1.88
26528--26689
22
7.3
22
81
4
110
32
11
19
37
1.87
26753--27074
22
14.4
22
64
20
73
40
10
14
35
1.80
26809--27527
44
16.9
43
68
15
196
40
8
15
35
1.78
26946--27075
66
2.0
66
83
3
163
41
10
13
35
1.77
26903--27094
22
8.6
22
75
8
131
41
9
13
35
1.77
27201--27267
19
3.5
19
87
2
89
44
10
19
25
1.82
27258--27527
22
12.5
22
70
12
139
40
8
13
37
1.76
27449--27540
22
4.1
22
80
1
85
35
6
16
41
1.74
27742--27794
21
2.5
21
84
3
61
39
13
11
35
1.80
28127--28272
31
4.8
31
82
3
163
31
24
27
16
1.96
34442--34565
64
1.9
64
95
0
221
47
5
17
29
1.70
35466--35509
19
2.4
19
85
7
56
34
4
52
9
1.54
44152--44191
21
1.9
21
94
0
71
42
37
10
10
1.72
44724--44770
24
2.0
24
91
0
76
21
29
4
44
1.71
44757--44793
17
2.1
18
95
5
67
18
32
0
48
1.49

Tables:   1

The End!