Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012598.1 Corchorus capsularis cultivar CVL-1 contig12619, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25907

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
241--287
24
2.0
24
91
0
76
21
29
4
44
1.71
274--310
17
2.1
18
95
5
67
18
32
0
48
1.49
5414--5447
2
17.0
2
100
0
68
50
0
0
50
1.00
6050--6090
15
2.7
15
82
17
57
21
4
0
73
1.02
7139--7163
12
2.1
12
100
0
50
16
36
24
24
1.94
7524--7553
15
2.0
15
93
0
51
30
10
26
33
1.89
13289--13419
22
6.1
22
66
18
69
34
14
9
41
1.78
13361--13399
19
2.1
18
85
9
51
33
10
5
51
1.58
13463--13505
22
2.0
22
85
0
59
34
20
11
32
1.89
13602--13661
23
2.5
24
83
5
77
41
13
6
38
1.70
13602--13683
23
3.5
23
77
9
76
40
15
7
36
1.76
13557--14189
22
28.9
21
67
18
149
35
16
9
39
1.80
14848--14888
20
2.0
20
85
0
55
21
9
29
39
1.86
18725--18811
22
3.9
23
83
6
124
33
16
13
36
1.88
18676--18858
66
2.7
67
78
12
162
37
16
9
36
1.82
18726--18812
44
2.0
45
90
2
140
33
16
13
36
1.88
18679--18855
22
7.9
22
73
9
117
36
15
10
37
1.82
19132--19180
25
2.0
24
84
11
64
53
0
0
46
1.00
24798--24872
26
2.9
26
92
2
125
28
8
20
44
1.79

Tables:   1

The End!