Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001260.1 Corchorus capsularis cultivar CVL-1 contig01260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3157
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:1600 original size:54 final size:55

Alignment explanation


    Indices: 1536--1644  Score: 166
    Period size: 54  Copynumber: 2.0  Consensus size: 55

       1526 AAAGTTCAGA

                                    *                  *           
       1536 GCAAAATGTCTCGATTTTAATTTAGTGGACAAAGTGTCATTG-GCCCATATATAG
          1 GCAAAATGTCTCGATTTTAATTTAATGGACAAAGTGTCATTGACCCCATATATAG

                 *             *        *                          
       1590 GCAAATTGTCTCGATTTTAGTTTAATGGGCAAAGTGTCATTGACCCCATATATAG
          1 GCAAAATGTCTCGATTTTAATTTAATGGACAAAGTGTCATTGACCCCATATATAG

       1645 TTCAGGCAAA


Statistics
Matches: 49,  Mismatches: 5, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  54   38  0.78
  55   11  0.22

ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Consensus pattern (55 bp):   
GCAAAATGTCTCGATTTTAATTTAATGGACAAAGTGTCATTGACCCCATATATAG
Done.