Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012600.1 Corchorus capsularis cultivar CVL-1 contig12621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50683

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139--173
18
1.9
18
88
0
52
17
22
5
54
1.64
3489--3583
31
3.1
31
87
0
127
25
14
24
35
1.93
5309--5343
2
17.5
2
100
0
70
48
0
0
51
1.00
5811--5870
30
2.0
30
96
0
111
15
20
0
65
1.28
7433--7463
2
15.5
2
100
0
62
51
0
0
48
1.00
8866--8892
2
13.5
2
100
0
54
48
0
0
51
1.00
9821--9911
33
2.8
33
81
5
123
17
36
35
10
1.85
10002--10081
33
2.4
34
80
10
94
10
42
36
11
1.74
15158--15186
6
4.8
6
100
0
58
17
31
0
51
1.45
34119--34179
30
2.0
30
84
15
81
1
22
4
70
1.15
35872--35915
21
2.0
21
82
4
52
15
13
0
70
1.17
38267--38404
57
2.4
57
84
1
206
41
23
24
10
1.86
38490--38780
60
5.2
49
74
22
199
45
23
17
14
1.84
38500--38748
60
4.1
60
92
1
408
45
22
18
13
1.84
38572--38666
30
3.2
30
61
21
72
44
25
16
13
1.85
38679--38796
48
2.4
51
88
4
170
44
22
16
15
1.85
38626--38858
111
2.1
111
82
5
274
46
21
18
12
1.82

Tables:   1

The End!