genome.fa.s12601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012601.1 Corchorus capsularis cultivar CVL-1 contig12622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  184842

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11350--11377	13	2.2	13	100	0	56	39	0	7	53	1.28
11837--11943	53	2.0	53	100	0	214	29	18	11	40	1.86
16744--16807	27	2.3	27	97	2	119	54	7	28	9	1.60
25736--25765	15	2.0	15	100	0	60	0	40	0	60	0.97
25865--25899	14	2.6	14	90	4	54	28	0	0	71	0.86
25883--25929	24	1.9	25	83	12	62	31	4	4	59	1.36
30672--31097	210	2.0	210	83	3	536	30	19	17	31	1.95
32709--32733	7	3.6	7	100	0	50	32	12	56	0	1.36
43249--43400	74	2.1	74	97	0	286	38	17	13	30	1.89
49745--50005	104	2.5	106	89	5	395	40	8	9	42	1.67
53297--53328	16	2.0	16	100	0	64	25	18	18	37	1.94
53872--54090	108	2.0	108	95	0	393	25	13	29	31	1.93
54756--54790	15	2.3	15	90	0	52	14	8	20	57	1.63
54771--54810	18	2.2	18	90	0	62	12	7	17	62	1.52
54788--54830	16	2.7	16	85	0	59	13	4	20	60	1.51
54771--54830	16	3.6	18	80	8	56	15	6	20	58	1.59
59316--59454	74	1.9	74	93	1	244	23	28	7	40	1.82
60838--61919	540	2.0	541	99	0	2148	39	17	11	31	1.86
62026--62111	45	1.9	45	90	0	136	34	19	19	25	1.96
63898--63927	2	15.5	2	93	6	53	46	0	0	53	1.00
64672--64697	13	2.0	13	100	0	52	53	7	0	38	1.30
65619--65708	45	2.0	45	95	0	162	25	23	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71709--71738	3	10.3	3	92	7	53	70	0	0	30	0.88
78824--79021	31	6.5	31	73	12	160	35	20	18	25	1.95
78828--78991	60	2.7	60	87	1	249	35	20	18	25	1.95
79049--79217	31	5.6	31	74	13	181	26	20	20	33	1.97
79046--79214	60	2.8	60	91	4	279	27	19	20	33	1.96
79081--79183	29	3.5	29	68	15	84	29	20	18	32	1.96
84479--84563	30	2.9	30	85	3	111	40	14	24	21	1.90
84491--84578	29	3.0	29	82	11	99	37	12	25	25	1.91
87720--87794	31	2.4	31	82	4	89	32	16	21	30	1.95
95538--95568	15	2.1	15	100	0	62	48	0	25	25	1.52
96203--96290	39	2.4	36	78	12	97	31	20	13	34	1.92
98549--98625	39	2.0	39	82	5	93	20	16	14	48	1.81
101895--101984	39	2.4	37	81	9	112	36	20	15	27	1.93
104016--104361	186	1.9	187	87	3	509	31	15	8	44	1.76
104428--104722	135	2.2	132	80	10	316	24	14	7	52	1.68
111208--111276	35	2.0	35	88	0	102	69	7	10	13	1.36
118098--118161	33	1.9	33	84	6	85	29	14	14	42	1.84
118210--118277	24	2.6	27	70	15	70	33	0	29	36	1.58
123615--123741	62	2.0	62	100	0	254	27	14	15	42	1.86
125720--125830	55	2.0	57	85	3	154	45	11	11	30	1.76
131171--131202	7	4.6	7	100	0	64	0	0	12	87	0.54
132884--132959	32	2.3	34	76	15	88	28	21	0	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132956--133035	26	3.2	26	84	5	112	55	10	1	33	1.41
133103--133132	10	3.0	10	95	0	51	63	0	0	36	0.95
133296--133338	20	2.2	20	86	0	59	41	9	34	13	1.77
143627--143786	80	2.0	80	100	0	320	32	28	7	31	1.85
143819--143859	3	13.7	3	84	0	55	4	58	2	34	1.32
143810--143859	12	4.2	12	86	0	73	8	56	2	34	1.40
143810--143862	9	5.9	9	84	0	52	9	54	1	33	1.43
146953--146998	23	2.0	23	100	0	92	26	34	0	39	1.57
155359--155461	22	4.6	22	74	13	79	39	11	10	37	1.77
155427--155497	20	3.5	20	83	11	81	28	15	11	45	1.80
156624--156675	22	2.4	22	90	3	88	36	11	7	44	1.70
157039--157125	22	3.9	21	75	18	70	41	19	8	31	1.80
157093--157190	22	4.5	21	77	19	94	35	17	11	35	1.85
157048--157221	44	3.9	45	80	10	155	38	17	9	34	1.82
157091--157221	44	3.0	43	83	7	158	35	17	9	36	1.83
161046--161093	23	2.0	24	88	8	71	14	31	16	37	1.89
162375--162421	23	2.0	24	91	8	78	12	31	19	36	1.89
171953--172004	21	2.5	20	75	9	50	9	32	30	26	1.89
176740--176818	37	2.1	38	88	4	115	36	7	18	36	1.80
178106--178167	31	2.0	32	90	3	99	40	6	19	33	1.77
179358--179436	37	2.1	38	90	4	124	35	8	18	36	1.83
181038--181134	48	2.0	48	97	0	185	24	20	11	43	1.85

Tables:   1

The End!