Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012604.1 Corchorus capsularis cultivar CVL-1 contig12625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76095

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9473--9503
6
5.2
6
100
0
62
16
16
19
48
1.81
13125--13160
16
2.3
16
90
4
56
22
16
16
44
1.86
13229--13255
6
4.5
6
100
0
54
18
14
0
66
1.25
13386--13417
12
2.7
12
90
0
55
21
0
3
75
0.95
13642--13695
26
2.2
24
83
6
63
12
1
24
61
1.42
13721--13948
114
2.0
114
95
0
411
41
13
17
27
1.87
29970--30034
31
2.1
31
97
0
121
43
23
13
20
1.87
30915--30963
21
2.3
21
89
0
71
32
26
32
8
1.86
31672--31705
1
34.0
1
100
0
68
0
0
0
100
0.00
35157--35256
34
2.9
34
91
2
157
19
24
1
56
1.48
35309--35351
15
2.8
16
82
10
63
23
16
6
53
1.67
35289--35340
21
2.5
21
93
0
86
21
17
5
55
1.62
35367--35438
27
2.7
26
86
4
99
18
20
4
56
1.57
38946--38983
17
2.2
17
86
9
51
26
0
5
68
1.11
39233--39259
2
13.5
2
100
0
54
51
0
0
48
1.00
42740--42894
60
2.6
60
88
4
215
34
16
16
32
1.91
42951--43108
59
2.6
61
86
7
205
31
17
17
33
1.93
45508--45558
26
2.0
26
96
0
93
41
3
1
52
1.31
56993--57018
2
13.0
2
100
0
52
50
0
0
50
1.00
57431--57471
8
5.1
8
81
0
55
82
4
2
9
0.89
60325--60353
2
15.0
2
92
7
51
48
0
0
51
1.00
61902--61936
2
17.5
2
93
0
61
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62964--63028
31
2.1
31
97
0
121
21
16
15
46
1.84

Tables:   1

The End!