Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012605.1 Corchorus capsularis cultivar CVL-1 contig12626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27031

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5818--6033
108
1.9
112
82
7
271
44
19
9
25
1.81
6354--6402
23
2.1
23
85
11
64
32
4
6
57
1.42
10307--10348
21
2.1
20
82
8
50
23
30
9
35
1.87
10440--10575
32
4.3
32
89
3
213
8
38
38
14
1.78
10444--10575
62
2.1
64
91
2
214
9
39
37
14
1.78
11221--11338
60
2.0
60
96
0
218
19
11
15
54
1.70
11286--11501
107
2.0
109
95
1
391
30
11
14
43
1.81
11491--11584
3
32.0
3
91
4
147
62
0
0
37
0.95
11714--11747
11
3.1
11
91
8
52
52
2
0
44
1.16
12201--12731
187
2.8
186
87
0
731
35
16
9
39
1.80
15559--15592
15
2.2
16
89
5
52
82
0
11
5
0.83
16344--16417
24
3.1
24
88
1
105
47
21
16
14
1.82
21477--21511
17
2.1
17
100
0
70
34
11
28
25
1.91
23553--23613
20
3.1
20
80
4
88
55
11
0
32
1.36
26078--26178
47
2.1
47
96
0
184
32
4
15
46
1.68

Tables:   1

The End!