Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012607.1 Corchorus capsularis cultivar CVL-1 contig12628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43127

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5141--5248
36
3.0
36
97
0
207
18
47
14
19
1.83
5403--5532
30
4.3
30
95
0
224
17
53
4
23
1.62
5520--5556
18
2.1
18
89
0
56
18
48
8
24
1.75
5537--5608
30
2.4
30
97
0
135
16
47
6
29
1.73
5762--5889
57
2.2
57
85
0
175
18
38
17
25
1.93
5787--5906
57
2.1
57
81
3
134
20
41
15
23
1.89
5758--6498
333
2.2
333
89
1
1139
19
32
15
31
1.93
10448--10477
15
2.0
15
100
0
60
6
46
0
46
1.29
14839--14875
6
6.5
6
90
6
51
86
0
13
0
0.57
18013--18045
3
11.0
3
93
0
57
63
0
36
0
0.95
31788--31972
92
2.0
92
100
0
370
40
15
16
28
1.88
36785--36821
11
3.2
12
81
11
51
48
13
8
29
1.71
39357--39393
19
1.9
19
89
10
58
29
5
0
64
1.15
39560--39735
22
8.0
21
74
8
127
34
10
17
38
1.83
39591--39735
44
3.3
43
83
7
148
33
11
17
37
1.86
39778--40169
22
17.6
22
70
11
120
40
10
15
33
1.81
39976--40039
21
2.8
21
81
11
65
43
10
12
32
1.77
40028--40193
88
1.9
88
82
5
210
43
10
12
33
1.77
40000--40191
22
8.8
22
77
6
97
43
9
13
33
1.75
40319--40567
22
11.5
22
72
15
139
41
9
14
34
1.78
40532--40578
22
2.1
22
88
0
67
40
8
10
40
1.70
40663--40835
22
7.9
22
68
11
95
42
10
13
32
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40243--40837
44
13.6
44
69
13
252
39
9
15
35
1.80
42528--42572
21
2.1
21
87
0
63
17
33
11
37
1.85
42786--42904
32
3.7
32
75
8
116
14
37
35
12
1.84
42970--43086
33
3.6
31
76
18
91
11
41
34
11
1.79

Tables:   1

The End!