Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012608.1 Corchorus capsularis cultivar CVL-1 contig12629, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22177

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
579--621
16
2.7
16
86
10
61
39
0
0
60
0.97
578--621
17
2.6
17
89
10
65
40
0
0
59
0.98
744--790
14
3.5
13
77
13
51
2
38
4
55
1.31
1982--2031
23
2.2
23
96
0
91
18
16
16
50
1.79
2499--2528
2
15.0
2
100
0
60
50
0
0
50
1.00
8807--8831
11
2.3
11
100
0
50
16
12
16
56
1.68
15233--15312
29
2.7
30
82
3
81
31
15
11
42
1.81
15896--15932
8
4.9
8
80
12
51
24
10
0
64
1.25
15897--15943
22
2.1
22
88
0
67
29
10
0
59
1.31
19632--19665
17
2.0
17
94
0
59
26
14
23
35
1.94
20247--20515
75
3.6
75
93
2
450
40
6
17
34
1.76

Tables:   1

The End!