Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012609.1 Corchorus capsularis cultivar CVL-1 contig12630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93369

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1876--2002
16
7.8
16
80
10
132
23
13
31
31
1.93
1876--2002
17
7.7
17
83
5
154
23
13
31
31
1.93
8252--8351
47
2.1
47
96
1
148
35
9
14
42
1.77
11981--12028
23
2.1
23
88
0
69
31
10
16
41
1.82
12689--12753
29
2.2
29
81
10
71
27
7
13
50
1.69
21112--21149
11
3.5
11
89
10
51
39
0
2
57
1.12
23443--23507
29
2.2
29
83
2
76
21
15
21
41
1.90
23650--23693
21
2.1
21
100
0
88
18
40
9
31
1.81
23764--23815
25
2.1
25
92
3
88
38
25
0
36
1.56
23832--23899
26
2.6
26
92
0
109
52
10
1
35
1.44
23832--23875
15
3.2
15
75
24
60
52
11
0
36
1.38
24215--24259
21
2.1
21
87
0
63
31
13
40
15
1.86
24274--24316
12
3.4
12
81
9
50
44
20
0
34
1.52
24614--24643
15
2.0
15
93
0
51
43
6
30
20
1.77
26424--26468
13
3.4
13
81
6
63
57
4
8
28
1.48
31942--31976
3
11.7
3
100
0
70
31
0
0
68
0.90
32784--32822
21
1.9
20
84
5
51
20
46
7
25
1.77
33122--33212
32
2.7
31
80
18
103
75
4
16
3
1.09
35295--35323
2
14.5
2
100
0
58
48
0
0
51
1.00
37686--37747
31
2.0
31
84
3
81
33
16
3
46
1.63
42952--43011
30
2.0
30
100
0
120
43
20
6
30
1.77
48792--48842
23
2.2
24
86
6
70
7
15
23
52
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50729--50783
27
2.0
27
86
6
76
32
5
23
38
1.78
52997--53073
39
2.0
39
84
5
102
50
1
48
0
1.09
52997--53061
18
3.4
18
82
6
76
55
0
44
0
0.99
59606--59676
29
2.4
30
81
9
83
43
18
23
14
1.86
60012--60061
20
2.5
20
75
15
50
60
4
4
32
1.34
60119--60183
31
2.1
31
85
5
87
29
16
4
49
1.66
60495--60533
20
2.0
20
85
10
53
28
5
2
64
1.28
60692--60770
22
3.7
22
73
10
74
35
10
16
37
1.82
61020--61252
22
10.5
22
73
11
113
42
10
13
33
1.78
61020--61250
44
5.2
43
72
12
139
42
10
13
33
1.78
61081--61209
66
2.0
66
81
3
152
41
10
13
34
1.79
61334--61384
19
2.6
20
90
6
86
45
11
17
25
1.83
61328--61666
22
15.9
21
71
14
182
40
10
16
33
1.82
61609--61677
22
3.1
22
75
4
59
36
13
11
39
1.80
61730--61863
22
5.9
22
72
13
83
37
12
16
33
1.87
62953--62996
22
2.0
22
90
0
70
43
2
15
38
1.60
67646--67691
23
2.1
22
92
8
76
13
8
17
60
1.56
69964--70003
20
2.1
19
85
4
53
62
0
2
35
1.09
71247--71281
14
2.6
14
90
4
54
31
0
0
68
0.90
72939--73089
74
2.1
74
94
3
270
39
9
29
21
1.84
78788--78891
51
2.0
51
98
0
199
36
7
10
45
1.68
80895--80937
21
2.0
21
86
0
59
41
25
13
18
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83745--83770
10
2.6
10
100
0
52
30
30
0
38
1.58
89058--89103
3
15.7
3
90
4
76
36
0
0
63
0.95
90180--90475
109
2.7
109
90
4
441
37
11
1
50
1.48

Tables:   1

The End!