Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012611.1 Corchorus capsularis cultivar CVL-1 contig12632, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12990
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:481 original size:10 final size:10

Alignment explanation


    Indices: 466--491  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        456 AATTTAATAT

                      
        466 GGATATTTAC
          1 GGATATTTAC

                      
        476 GGATATTTAC
          1 GGATATTTAC

                  
        486 GGATAT
          1 GGATAT

        492 ATCGAGATTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38


Consensus pattern (10 bp):   
GGATATTTAC
Done.