Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012613.1 Corchorus capsularis cultivar CVL-1 contig12634, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20025

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1160--1583
225
1.9
224
87
3
627
33
18
16
31
1.94
1860--1949
22
4.2
21
77
8
67
38
15
8
36
1.79
1914--1961
20
2.4
20
82
6
62
43
14
6
35
1.71
2200--2340
22
6.4
22
71
9
90
34
9
12
43
1.76
2241--2342
44
2.3
44
89
3
152
34
10
12
42
1.78
2512--2569
29
2.0
30
86
3
82
39
20
13
25
1.90
2858--2914
29
1.9
30
85
3
80
24
14
26
35
1.93
4000--4025
5
5.2
5
100
0
52
57
0
19
23
1.40
4997--5036
16
2.5
16
91
0
62
40
10
0
50
1.36
8811--8845
2
17.5
2
100
0
70
51
0
0
48
1.00
13140--13329
99
2.0
89
84
11
238
32
10
14
43
1.78
16796--16839
2
21.5
2
90
4
70
47
4
0
47
1.22
16864--16929
30
2.1
31
86
5
89
33
15
4
46
1.66
17068--17313
22
11.3
22
71
11
132
41
9
15
33
1.79
17190--17311
43
2.8
43
74
6
113
43
10
13
31
1.79
17434--17521
22
4.0
22
78
12
76
37
6
17
38
1.76
17720--17771
22
2.4
22
90
3
79
48
7
9
34
1.65
17937--18032
44
2.2
44
84
3
122
44
8
16
30
1.77
17957--18331
22
17.0
22
69
7
170
38
9
16
36
1.81
18768--18879
22
5.2
21
76
16
68
33
6
6
53
1.51
19168--19284
31
3.8
31
94
0
180
17
17
26
39
1.91
19140--19284
62
2.3
62
84
0
182
17
20
25
36
1.94

Tables:   1

The End!