Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01012615.1 Corchorus capsularis cultivar CVL-1 contig12636, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26954
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:5311 original size:22 final size:23
Alignment explanation
Indices: 5259--5513 Score: 128
Period size: 22 Copynumber: 11.6 Consensus size: 23
5249 TAAGGAGTGC
* *
5259 CAAAATTTGATAGA-A-GGTTAT
1 CAAAATTTCATAGAGATGATTAT
*
5280 C-AAATCTCATAGAG-TGATTAT
1 CAAAATTTCATAGAGATGATTAT
*
5301 CGAAATTTCATAGAGATCAGATTAT
1 CAAAATTTCATAGAGAT--GATTAT
* *
5326 CGAAATTT-ATAG-GAAGATTAT
1 CAAAATTTCATAGAGATGATTAT
* *
5347 CAAAATTTCATAGTGTTG-TTAT
1 CAAAATTTCATAGAGATGATTAT
* * *
5369 CAAAATTTCAAAGCGA-GGTTAT
1 CAAAATTTCATAGAGATGATTAT
*
5391 CAAAATTACATA-ATG-TGATTAT
1 CAAAATTTCATAGA-GATGATTAT
* * * * * *
5413 TAGAATTTCATAGAG-GGGTCAA
1 CAAAATTTCATAGAGATGATTAT
* * *
5435 CAAAATTTTATAAAGA-GGTTAT
1 CAAAATTTCATAGAGATGATTAT
* *
5457 CAAAATTTCATAAAGA-GGTTAT
1 CAAAATTTCATAGAGATGATTAT
* *
5479 CAAATTTTCA-AAATG-TGATTA-
1 CAAAATTTCATAGA-GATGATTAT
5500 CAAAAATTTCATAG
1 C-AAAATTTCATAG
5514 TGGTATTTCT
Statistics
Matches: 184, Mismatches: 33, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
20 10 0.05
21 25 0.14
22 124 0.67
23 7 0.04
24 4 0.02
25 14 0.08
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (23 bp):
CAAAATTTCATAGAGATGATTAT
Found at i:5343 original size:21 final size:24
Alignment explanation
Indices: 5295--5359 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 24
5285 CTCATAGAGT
5295 GATTATCGAAATTTCATAGAGATCA
1 GATTATCGAAATTTCATAGAGA-CA
5320 GATTATCGAAATTT-ATAG-GA-A
1 GATTATCGAAATTTCATAGAGACA
*
5341 GATTATCAAAATTTCATAG
1 GATTATCGAAATTTCATAG
5360 TGTTGTTATC
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
21 14 0.37
22 4 0.11
23 2 0.05
24 4 0.11
25 14 0.37
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (24 bp):
GATTATCGAAATTTCATAGAGACA
Found at i:5397 original size:44 final size:43
Alignment explanation
Indices: 5343--5510 Score: 142
Period size: 44 Copynumber: 3.8 Consensus size: 43
5333 TATAGGAAGA
* *
5343 TTATCAAAATTTCATAGTGTTGTTATCAAAATTTCAAAGCGAGG
1 TTATCAAAATTTCATAATG-TGTTATCAAAATTTCAAAGAGAGG
* * * * *
5387 TTATCAAAATTACATAATGTGATTATTAGAATTTCATAGAGGGG
1 TTATCAAAATTTCATAATGTG-TTATCAAAATTTCAAAGAGAGG
* * * * *
5431 TCAACAAAATTTTATAAAGAGGTTATCAAAATTTCATAA-AGAGG
1 TTATCAAAATTTCATAATG-TGTTATCAAAATTTCA-AAGAGAGG
* *
5475 TTATCAAATTTTCAAAATGTGATTA-CAAAAATTTCA
1 TTATCAAAATTTCATAATGTG-TTATC-AAAATTTCA
5511 TAGTGGTATT
Statistics
Matches: 95, Mismatches: 24, Indels: 10
0.74 0.19 0.08
Matches are distributed among these distances:
43 4 0.04
44 89 0.94
45 2 0.02
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35
Consensus pattern (43 bp):
TTATCAAAATTTCATAATGTGTTATCAAAATTTCAAAGAGAGG
Found at i:5818 original size:25 final size:24
Alignment explanation
Indices: 5768--5848 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 24
5758 CATAAGAAAG
*
5768 TTATCAAAATTTTATA-GAGAGGTT
1 TTATCAAAATTTTATAGGAGA-GAT
*
5792 TATATCAAAATTTTATAGGA-ATAT
1 T-TATCAAAATTTTATAGGAGAGAT
* *
5816 TTATCAAAATTTCATA-GTGAG--
1 TTATCAAAATTTTATAGGAGAGAT
5837 TTATCAAAATTT
1 TTATCAAAATTT
5849 CAGAATGTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
21 12 0.24
22 1 0.02
23 15 0.31
24 3 0.06
25 16 0.33
26 2 0.04
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.42
Consensus pattern (24 bp):
TTATCAAAATTTTATAGGAGAGAT
Found at i:5824 original size:23 final size:24
Alignment explanation
Indices: 5768--5848 Score: 82
Period size: 23 Copynumber: 3.5 Consensus size: 24
5758 CATAAGAAAG
*
5768 TTATCAAAATTTTATAGAGAGGTT
1 TTATCAAAATTTTATAGAGAGATT
5792 TATATCAAAATTTTATAG-GA-ATAT
1 T-TATCAAAATTTTATAGAGAGAT-T
* *
5816 TTATCAAAATTTCATAGTGAG---
1 TTATCAAAATTTTATAGAGAGATT
5837 TTATCAAAATTT
1 TTATCAAAATTT
5849 CAGAATGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
21 12 0.24
23 16 0.31
24 7 0.14
25 16 0.31
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.42
Consensus pattern (24 bp):
TTATCAAAATTTTATAGAGAGATT
Found at i:5915 original size:22 final size:22
Alignment explanation
Indices: 5890--5951 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
5880 GTTTTTATTA
*
5890 CATAATGTGGTTATCAATATAT
1 CATAATGTGGTTATCAACATAT
* *
5912 CAT-ATGGAGGTTATCAACATCT
1 CATAAT-GTGGTTATCAACATAT
*
5934 CATAGTGATGGTTATCAA
1 CATAATG-TGGTTATCAA
5952 AATTTCATTG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.06
22 20 0.62
23 10 0.31
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (22 bp):
CATAATGTGGTTATCAACATAT
Found at i:5970 original size:45 final size:45
Alignment explanation
Indices: 5897--5982 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
5887 TTACATAATG
* * *
5897 TGGTTATCAATATATCATATGGAGGTTATCAACATCTCATAGTGA
1 TGGTTATCAAAATATCATATGGAAGTTATCAAAATCTCATAGTGA
* *
5942 TGGTTATCAAAATTTCAT-TGGGAAGTTATCAAAATTTCATA
1 TGGTTATCAAAATATCATAT-GGAAGTTATCAAAATCTCATA
5983 TTGAGGACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 1 0.03
45 34 0.97
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (45 bp):
TGGTTATCAAAATATCATATGGAAGTTATCAAAATCTCATAGTGA
Found at i:6035 original size:22 final size:22
Alignment explanation
Indices: 5898--6114 Score: 104
Period size: 22 Copynumber: 9.9 Consensus size: 22
5888 TACATAATGT
* * * *
5898 GGTTATCAATATATCATATGGA
1 GGTTATCAAAATTTCATAAGAA
* * * *
5920 GGTTATCAACATCTCATAGTGAT
1 GGTTATCAAAATTTCATA-AGAA
**
5943 GGTTATCAAAATTTCATTGGGAA
1 GGTTATCAAAATTTCA-TAAGAA
*
5966 -GTTATCAAAATTTCATATTG-A
1 GGTTATCAAAATTTCATA-AGAA
* * * *
5987 GGACT-TCAAAATTCCTTAGGAA
1 GG-TTATCAAAATTTCATAAGAA
* *
6009 TGTTAACAAAATTTCATAAGAA
1 GGTTATCAAAATTTCATAAGAA
** *
6031 GGTTAAAAAAATTT-ATAAAAA
1 GGTTATCAAAATTTCATAAGAA
* * * *
6052 GGTTCTCGAAATTCCAT-AG-T
1 GGTTATCAAAATTTCATAAGAA
* *
6072 GTCATTATTAAAATTTCATAAGAA
1 G--GTTATCAAAATTTCATAAGAA
6096 GGTTATCAAAATTTCATAA
1 GGTTATCAAAATTTCATAA
6115 TGGAATCATA
Statistics
Matches: 144, Mismatches: 39, Indels: 24
0.70 0.19 0.12
Matches are distributed among these distances:
20 1 0.01
21 20 0.14
22 100 0.69
23 21 0.15
24 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (22 bp):
GGTTATCAAAATTTCATAAGAA
Found at i:6331 original size:29 final size:31
Alignment explanation
Indices: 6299--6367 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
6289 ATGCAATTTG
6299 GGATATAACGTTA-CAAAA-CAAGCAATTAA
1 GGATATAACGTTACCAAAAGCAAGCAATTAA
*
6328 GGATATAACGTTACCAAAAGCGAGCAATTAA
1 GGATATAACGTTACCAAAAGCAAGCAATTAA
6359 GGATATAAC
1 GGATATAAC
6368 CCGTTAGAGC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
29 13 0.35
30 5 0.14
31 19 0.51
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (31 bp):
GGATATAACGTTACCAAAAGCAAGCAATTAA
Found at i:6533 original size:31 final size:31
Alignment explanation
Indices: 6495--6604 Score: 152
Period size: 31 Copynumber: 3.6 Consensus size: 31
6485 CCCTAACTGA
6495 TTATATCCTTAATTGCTTGAAATCGAAAACG
1 TTATATCCTTAATTGCTTGAAATCGAAAACG
* *
6526 TTATATCCTTAATTGCTCGAAATCAAAAACG
1 TTATATCCTTAATTGCTTGAAATCGAAAACG
** * *
6557 TTATATCCTTAATTGCTTG-TTTTG-TAACG
1 TTATATCCTTAATTGCTTGAAATCGAAAACG
6586 TTATATCCTTAATTGCTTG
1 TTATATCCTTAATTGCTTG
6605 CGGCAGCAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
29 23 0.32
30 1 0.01
31 47 0.66
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (31 bp):
TTATATCCTTAATTGCTTGAAATCGAAAACG
Found at i:6616 original size:60 final size:61
Alignment explanation
Indices: 6495--6631 Score: 154
Period size: 60 Copynumber: 2.2 Consensus size: 61
6485 CCCTAACTGA
*
6495 TTATATCCTTAATTGCTTGAAATCGAAAACGTTATATCCTTAATTGCTCGAAATCAAAAACG
1 TTATATCCTTAATTGCTTGAAATCGAAAACGTTATATCCTTAATTGCTCGAAAGC-AAAACG
** * * **
6557 TTATATCCTTAATTGCTTG-TTTTG-TAACGTTATATCCTTAATTGCTTGCGGCAGC-AAACG
1 TTATATCCTTAATTGCTTGAAATCGAAAACGTTATATCCTTAATTGC-T-CGAAAGCAAAACG
*
6617 TTATATCCTAAATTG
1 TTATATCCTTAATTG
6632 GGTATTTGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
60 39 0.60
61 3 0.05
62 23 0.35
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (61 bp):
TTATATCCTTAATTGCTTGAAATCGAAAACGTTATATCCTTAATTGCTCGAAAGCAAAACG
Found at i:6620 original size:31 final size:31
Alignment explanation
Indices: 6495--6631 Score: 111
Period size: 31 Copynumber: 4.5 Consensus size: 31
6485 CCCTAACTGA
** *
6495 TTATATCCTTAATTGCTTGAAATC-GAAAACG
1 TTATATCCTTAATTGCTTG-CGTCAGCAAACG
* ** *
6526 TTATATCCTTAATTGCTCGAAATCA-AAAACG
1 TTATATCCTTAATTGCTTG-CGTCAGCAAACG
* ** *
6557 TTATATCCTTAATTGCTTG-TTTTG-TAACG
1 TTATATCCTTAATTGCTTGCGTCAGCAAACG
*
6586 TTATATCCTTAATTGCTTGCGGCAGCAAACG
1 TTATATCCTTAATTGCTTGCGTCAGCAAACG
*
6617 TTATATCCTAAATTG
1 TTATATCCTTAATTG
6632 GGTATTTGAC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
29 24 0.27
30 1 0.01
31 65 0.72
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (31 bp):
TTATATCCTTAATTGCTTGCGTCAGCAAACG
Found at i:6681 original size:3 final size:3
Alignment explanation
Indices: 6675--6724 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
6665 GTATTTTATT
* * *
6675 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ACA ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6723 AT
1 AT
6725 CCTAATTTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:7753 original size:31 final size:31
Alignment explanation
Indices: 7711--7789 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
7701 TACAAAACAT
* * **
7711 GCAATTTAGGATATAATGTTTTTGATTTTGA
1 GCAATTAAGGATATAATGTTTTCGATTTCAA
*
7742 GCAATTAAGGATATAACGTTTTCGATTTCAA
1 GCAATTAAGGATATAATGTTTTCGATTTCAA
*
7773 ACAATTAAGGATATAAT
1 GCAATTAAGGATATAAT
7790 CAGTTAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (31 bp):
GCAATTAAGGATATAATGTTTTCGATTTCAA
Found at i:7984 original size:29 final size:31
Alignment explanation
Indices: 7918--7984 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
7908 TCTAACGGAC
7918 TATATCCTTAATTGCTCGATTTTCGTAACGT
1 TATATCCTTAATTGCTCGATTTTCGTAACGT
* *
7949 TATATCCTTAATTGTTTG-TTTT-GTAACGT
1 TATATCCTTAATTGCTCGATTTTCGTAACGT
7978 TATATCC
1 TATATCC
7985 CAAATTGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 14 0.41
30 4 0.12
31 16 0.47
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.49
Consensus pattern (31 bp):
TATATCCTTAATTGCTCGATTTTCGTAACGT
Found at i:8276 original size:24 final size:24
Alignment explanation
Indices: 8240--8286 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8230 TATGTGTTGT
8240 TAGTTTATAATGCATATCGTATTA
1 TAGTTTATAATGCATATCGTATTA
* *
8264 TAGTTTATCATGCATATTGTATT
1 TAGTTTATAATGCATATCGTATT
8287 TTTTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (24 bp):
TAGTTTATAATGCATATCGTATTA
Found at i:9170 original size:70 final size:70
Alignment explanation
Indices: 9057--9194 Score: 258
Period size: 70 Copynumber: 2.0 Consensus size: 70
9047 GTTTTGGTTT
* *
9057 TGGGTAACATGCTTATGGACGATAAAAGCAGTAGGAATTTTTTCCAATCTTTTGTTTTGGCTCTT
1 TGGGTAACATGCTTATGGACGATAAAAGCAGTAGGAACTTTTTCCAATCTTTTGTTTTGGCTCCT
9122 GTAAA
66 GTAAA
9127 TGGGTAACATGCTTATGGACGATAAAAGCAGTAGGAACTTTTTCCAATCTTTTGTTTTGGCTCCT
1 TGGGTAACATGCTTATGGACGATAAAAGCAGTAGGAACTTTTTCCAATCTTTTGTTTTGGCTCCT
9192 GTA
66 GTA
9195 GATAAACCCA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (70 bp):
TGGGTAACATGCTTATGGACGATAAAAGCAGTAGGAACTTTTTCCAATCTTTTGTTTTGGCTCCT
GTAAA
Found at i:15111 original size:73 final size:73
Alignment explanation
Indices: 15025--15166 Score: 284
Period size: 73 Copynumber: 1.9 Consensus size: 73
15015 GTATATATAT
15025 ACCACAAGAATCTGATTGCAAAAATAGAAATAACCCAAATTACATTTTCTAAGCGAAAAGGGCAA
1 ACCACAAGAATCTGATTGCAAAAATAGAAATAACCCAAATTACATTTTCTAAGCGAAAAGGGCAA
15090 AAACCCAA
66 AAACCCAA
15098 ACCACAAGAATCTGATTGCAAAAATAGAAATAACCCAAATTACATTTTCTAAGCGAAAAGGGCAA
1 ACCACAAGAATCTGATTGCAAAAATAGAAATAACCCAAATTACATTTTCTAAGCGAAAAGGGCAA
15163 AAAC
66 AAAC
15167 TTTCTTCTCG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.49, C:0.20, G:0.13, T:0.18
Consensus pattern (73 bp):
ACCACAAGAATCTGATTGCAAAAATAGAAATAACCCAAATTACATTTTCTAAGCGAAAAGGGCAA
AAACCCAA
Found at i:15696 original size:20 final size:18
Alignment explanation
Indices: 15671--15715 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
15661 ACACATGTTT
15671 TACTAATAAATAATAATATA
1 TACTAATAAAT-A-AATATA
* *
15691 TACTAACAAATAAATATT
1 TACTAATAAATAAATATA
15709 TACTAAT
1 TACTAAT
15716 TTTGCTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 11 0.50
19 1 0.05
20 10 0.45
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
TACTAATAAATAAATATA
Found at i:19788 original size:15 final size:15
Alignment explanation
Indices: 19764--19793 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19754 TTTATGCTTA
*
19764 AAAAAGAAAAAATTT
1 AAAAACAAAAAATTT
19779 AAAAACAAAAAATTT
1 AAAAACAAAAAATTT
19794 GGTGCAAGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (15 bp):
AAAAACAAAAAATTT
Found at i:24032 original size:107 final size:105
Alignment explanation
Indices: 23835--24052 Score: 260
Period size: 107 Copynumber: 2.1 Consensus size: 105
23825 TTTCTAACCT
* ** **
23835 TTAAAATAAAATTTTTATTTTAATTTGGGCTACTCTTAGTGAATAAGTTATATATTTTATTTATA
1 TTAAAATAAAAATAATATTTTAATTTGGGCTAAACTTAGTGAATAAGTTATATATTTTATTTATA
* * *
23900 AAACCCTATAAAAATAGATTAATAATTTTAAAATTTACCC
66 AAACCCTATAAAAATAAAGTAATAATTTCAAAATTTACCC
* * *
23940 TTAAAATAAAAATAATATTTTAATTTAGGGCTAAACTTAGTGAAATCAGTTTTATATTTTATTTC
1 TTAAAATAAAAATAATATTTTAATTT-GGGCTAAACTTAGTG-AATAAGTTATATATTTTATTTA
* * *
24005 TAAAACTCTATAATAAA-AAACGT-ATAATTTCATAATTTACTC
64 TAAAACCCTATAA-AAATAAA-GTAATAATTTCAAAATTTACCC
24047 TTAAAA
1 TTAAAA
24053 ATTAAATTTC
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
105 23 0.24
106 13 0.14
107 55 0.58
108 4 0.04
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (105 bp):
TTAAAATAAAAATAATATTTTAATTTGGGCTAAACTTAGTGAATAAGTTATATATTTTATTTATA
AAACCCTATAAAAATAAAGTAATAATTTCAAAATTTACCC
Found at i:25379 original size:3 final size:3
Alignment explanation
Indices: 25373--25510 Score: 276
Period size: 3 Copynumber: 46.0 Consensus size: 3
25363 TATTATTATT
25373 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
25421 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
25469 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
25511 TTGTTAATCC
Statistics
Matches: 135, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 135 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
ATC
Done.