Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012617.1 Corchorus capsularis cultivar CVL-1 contig12638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40952

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3516--3650
67
2.0
67
88
0
198
20
20
24
34
1.97
4952--5008
16
3.5
16
76
7
53
47
31
12
8
1.72
7077--7124
12
3.9
12
78
5
51
81
2
12
4
0.93
7077--7124
19
2.6
18
80
6
60
81
2
12
4
0.93
9833--9973
69
2.0
71
86
2
196
31
24
29
14
1.95
10831--10856
12
2.2
12
100
0
52
50
0
0
50
1.00
14582--14624
12
3.5
12
93
6
77
34
16
23
25
1.95
16305--16343
10
3.9
10
93
0
69
30
2
20
46
1.64
16312--16366
18
2.9
18
83
5
56
32
7
20
40
1.80
16454--16492
12
3.6
12
74
25
50
33
15
25
25
1.95
19799--19991
96
2.0
95
95
1
350
15
29
11
43
1.83
20657--20684
6
4.7
6
100
0
56
50
32
0
17
1.47
26232--26287
28
2.0
28
100
0
112
35
10
17
35
1.85
26669--26831
31
5.5
31
75
12
146
17
22
26
32
1.97
26742--26791
22
2.5
20
87
9
66
20
16
26
38
1.92
26722--26822
53
1.9
53
89
0
157
16
18
27
36
1.93
27630--27733
40
2.6
40
81
6
113
33
18
16
31
1.93
27878--28461
132
4.4
133
95
1
1039
32
16
14
37
1.88
27878--28461
266
2.2
265
96
0
1080
32
16
14
37
1.88
35171--35942
202
3.8
201
92
1
1183
33
16
16
33
1.91
35171--35942
403
1.9
400
89
1
1197
33
16
16
33
1.91
36061--36102
20
2.1
20
90
0
66
26
7
23
42
1.80

Tables:   1

The End!