Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012618.1 Corchorus capsularis cultivar CVL-1 contig12639, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103598

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5562--5990
22
19.7
22
68
12
170
36
15
8
38
1.79
5754--5838
23
3.8
22
82
6
100
38
12
5
42
1.68
5747--5838
46
2.0
45
87
6
132
39
15
5
40
1.70
6085--6334
22
11.5
22
71
12
135
34
14
10
42
1.78
6198--6450
22
11.3
22
70
18
98
36
15
9
38
1.80
6496--6649
44
3.4
45
82
10
163
39
14
10
35
1.81
6569--6695
44
2.9
44
85
2
157
37
15
11
34
1.84
6483--6696
22
9.5
22
70
14
141
38
15
9
35
1.81
15118--15184
32
2.0
32
85
8
89
35
10
5
47
1.62
25373--25406
5
6.8
5
93
0
59
55
0
2
41
1.15
25601--25626
12
2.2
12
100
0
52
38
23
7
30
1.83
31777--31805
6
4.8
6
100
0
58
17
34
0
48
1.47
36394--36431
11
3.4
11
88
3
58
78
0
15
5
0.91
36387--36431
6
7.7
6
85
5
56
80
2
13
4
0.97
36489--36614
61
2.1
61
95
0
225
28
13
27
30
1.94
36481--36591
30
3.7
30
81
2
150
29
13
27
28
1.94
36640--36675
14
2.5
15
90
9
65
36
0
0
63
0.94
36640--36677
15
2.5
15
91
4
58
36
0
0
63
0.95
43608--43645
17
2.2
18
85
4
51
57
18
13
10
1.63
44490--44577
29
3.0
29
94
0
158
36
21
6
35
1.80
47825--48174
156
2.3
154
79
8
379
34
19
15
30
1.92
49842--49896
17
3.3
17
76
5
67
23
14
3
58
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49834--49896
33
1.9
33
96
0
117
22
12
4
60
1.51
49836--49888
16
3.2
16
76
5
61
22
11
5
60
1.52
50812--50843
14
2.3
14
100
0
64
34
6
9
50
1.60
51256--51280
11
2.3
11
100
0
50
40
24
0
36
1.55
51443--51507
30
2.1
31
86
8
89
27
18
4
49
1.67
51449--51514
30
2.1
31
83
10
82
31
15
4
48
1.65
51826--51863
19
2.0
20
85
15
53
28
5
2
63
1.30
52061--52160
45
2.3
43
81
11
105
34
10
19
37
1.85
52037--52167
22
5.9
22
73
8
104
35
8
18
38
1.81
52230--52326
22
4.4
22
76
12
83
35
9
17
38
1.82
52219--52326
44
2.5
42
77
8
108
35
8
19
37
1.82
52377--52430
22
2.3
23
82
14
67
38
12
14
33
1.85
52608--52902
22
13.6
22
70
12
137
40
10
13
35
1.78
52608--52747
66
2.1
66
81
7
160
42
11
12
34
1.78
52584--52730
44
3.4
44
77
12
135
41
10
13
34
1.80
52799--53064
22
12.0
22
72
8
117
34
9
15
39
1.81
52608--53014
22
18.6
22
70
13
130
38
10
14
36
1.80
52944--53028
45
1.9
44
83
7
109
34
11
16
37
1.85
57489--57555
33
2.0
33
97
0
125
25
32
8
32
1.87
63864--63894
15
2.1
15
93
0
53
6
6
3
83
0.88
68207--68346
64
2.2
63
78
8
149
30
17
15
36
1.91
72594--72705
54
2.1
55
93
1
190
49
9
12
28
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73695--73737
21
2.0
21
95
0
77
34
9
32
23
1.87
79717--79871
56
2.8
56
93
3
249
23
27
5
43
1.75
84637--84686
16
3.1
16
91
0
82
50
6
6
38
1.52
84943--85015
27
2.7
27
89
2
101
46
26
12
15
1.80
88059--88122
33
1.9
33
83
0
83
29
15
26
28
1.96
94896--94994
48
2.1
48
96
0
180
23
7
22
47
1.75
95104--95173
21
3.3
21
72
21
65
41
10
11
37
1.75
95140--95219
22
3.7
22
83
8
85
36
7
13
42
1.73
102021--102049
14
2.1
14
100
0
58
37
13
27
20
1.91
102114--102162
12
4.1
12
79
10
55
65
0
8
26
1.20
102120--102162
3
14.3
3
85
0
59
65
0
6
27
1.18

Tables:   1

The End!