Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012623.1 Corchorus capsularis cultivar CVL-1 contig12644, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5149
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36


Found at i:2238 original size:2 final size:2

Alignment explanation


    Indices: 2233--2273  Score: 57
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       2223 TTAGGACTAC

                                                     *                    
       2233 TA TA TA TA TA TA TA TA TA TCA TA TA TA TC T- TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T

       2274 TTAAAACAAT


Statistics
Matches: 36,  Mismatches: 1, Indels: 4
        0.88            0.02        0.10

Matches are distributed among these distances:
   1    1  0.03
   2   33  0.92
   3    2  0.06

ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:4553 original size:2 final size:2

Alignment explanation


    Indices: 4546--4576  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       4536 TTCCCTTAAG

                                                          
       4546 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4577 TCTTAATTTC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.