Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012625.1 Corchorus capsularis cultivar CVL-1 contig12646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85974

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9105--9150
23
2.0
23
87
4
67
52
2
10
34
1.49
9111--9156
22
2.0
23
83
4
58
54
6
10
28
1.60
10868--11130
107
2.5
104
87
3
375
41
9
8
40
1.68
11141--11180
17
2.4
17
83
8
55
85
0
10
5
0.75
12377--12404
2
14.0
2
100
0
56
50
0
0
50
1.00
19623--19681
25
2.4
25
91
5
95
35
23
0
40
1.55
19691--19758
26
2.6
26
90
0
109
54
10
1
33
1.43
19691--19808
52
2.4
51
79
13
122
54
10
1
33
1.44
20697--20799
31
3.4
30
73
15
104
38
17
18
25
1.92
20636--20802
60
2.8
58
82
5
190
37
16
17
28
1.92
20830--20934
31
3.5
30
73
10
106
28
20
17
33
1.95
22490--22524
13
2.7
13
86
0
52
62
0
2
34
1.10
23269--23312
21
2.1
21
83
8
54
56
6
2
34
1.38
23641--23687
22
2.1
22
96
0
85
34
0
6
59
1.23
23991--24016
13
2.0
13
100
0
52
53
0
7
38
1.30
28367--28407
20
2.0
20
100
0
82
29
4
29
36
1.78
33046--33087
15
2.6
17
78
14
54
52
19
14
14
1.75
33341--33416
32
2.4
32
84
6
93
43
26
9
21
1.82
42000--42028
5
6.0
5
96
4
51
82
17
0
0
0.66
43388--43458
30
2.4
29
81
9
83
49
9
14
26
1.74
43653--43691
20
2.0
20
100
0
78
28
0
10
61
1.28
52279--52324
8
5.3
9
84
10
53
50
2
0
47
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52283--52323
2
21.0
2
85
14
59
48
2
0
48
1.14
58583--58612
3
10.0
3
92
0
51
63
0
0
36
0.95
64070--64120
23
2.1
24
82
10
59
37
7
7
47
1.62
65163--65210
21
2.3
20
73
16
53
66
6
4
22
1.32
65650--65678
13
2.2
13
100
0
58
6
17
27
48
1.72
66015--66057
19
2.1
21
87
8
63
25
0
6
67
1.15
68571--69129
155
3.6
151
77
8
500
30
14
20
33
1.93
77049--77313
129
2.1
129
99
0
523
32
13
9
43
1.77
77266--77496
70
3.2
70
83
10
293
37
12
0
49
1.46
77266--77496
78
3.1
76
89
7
323
37
12
0
49
1.46
81222--81249
2
14.0
2
100
0
56
50
0
0
50
1.00
84003--84461
171
2.7
166
81
4
587
31
14
15
39
1.87

Tables:   1

The End!