Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012627.1 Corchorus capsularis cultivar CVL-1 contig12648, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11225

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--84
18
2.7
18
83
6
62
75
0
20
4
0.97
93--236
45
3.2
44
86
3
189
33
7
21
37
1.82
994--1073
23
3.3
24
75
16
76
68
0
23
7
1.14
993--1070
25
3.2
24
70
15
61
70
0
21
7
1.12
2167--2223
29
2.0
29
82
0
69
29
17
14
38
1.89
2198--2284
35
2.5
35
81
3
86
18
20
21
39
1.93
2328--2402
35
2.1
35
90
0
114
16
21
21
41
1.90
2469--2570
50
2.0
50
83
7
127
25
15
18
40
1.90
2572--2880
70
4.4
70
85
1
429
21
18
22
38
1.93
2568--2881
141
2.2
141
88
1
468
21
18
21
38
1.93
2949--3224
71
3.9
70
88
1
399
22
17
22
37
1.94
2759--3142
191
2.0
189
83
6
472
20
17
23
38
1.93
2960--3214
141
1.8
141
91
0
420
21
18
23
37
1.94
3746--3772
11
2.5
11
100
0
54
92
7
0
0
0.38
6473--6502
15
2.0
15
93
0
51
50
10
6
33
1.62

Tables:   1

The End!