Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001263.1 Corchorus capsularis cultivar CVL-1 contig01263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10144
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30


Found at i:49 original size:2 final size:2

Alignment explanation


    Indices: 42--77  Score: 63
    Period size: 2  Copynumber: 18.0  Consensus size: 2

         32 GCAATAGCTG

                            *                                    
         42 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

         78 TGAAGTAAAT


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Found at i:2791 original size:12 final size:14

Alignment explanation


    Indices: 2743--2795  Score: 53
    Period size: 13  Copynumber: 4.1  Consensus size: 14

       2733 AATGAATTAT

                           
       2743 TATTATATA-AAGT-
          1 TATTATATATAA-TA

               *          
       2756 TATCATATAT-ATA
          1 TATTATATATAATA

                          
       2769 TATTATATATAATA
          1 TATTATATATAATA

                          
       2783 -ATT-TATATAATA
          1 TATTATATATAATA

             
       2795 T
          1 T

       2796 TAAAAGAAAA


Statistics
Matches: 34,  Mismatches: 2, Indels: 8
        0.77            0.05        0.18

Matches are distributed among these distances:
  12   10  0.29
  13   21  0.62
  14    3  0.09

ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49


Consensus pattern (14 bp):   
TATTATATATAATA
Done.