Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012632.1 Corchorus capsularis cultivar CVL-1 contig12653, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49556

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--166
33
2.4
33
87
0
106
21
40
28
10
1.85
109--193
33
2.6
32
81
10
100
21
42
28
8
1.81
12974--13024
25
2.0
25
84
0
66
31
19
17
31
1.95
17734--17854
22
5.6
21
76
9
118
33
17
10
38
1.84
17715--17857
65
2.2
65
93
0
241
30
18
11
39
1.85
17931--17983
22
2.4
22
87
0
70
32
11
5
50
1.61
18329--18386
29
2.0
29
83
6
73
46
15
1
36
1.56
28516--28567
22
2.4
21
84
15
70
42
7
11
38
1.70
28529--28569
11
3.7
11
93
0
73
43
7
9
39
1.65
33094--33375
120
2.3
119
91
1
429
21
24
26
28
1.99
38582--38622
17
2.6
15
88
7
55
51
4
17
26
1.65
38581--38613
17
1.9
17
100
0
66
48
6
21
24
1.72
39706--39734
15
1.9
15
100
0
58
41
20
31
6
1.79
42537--42568
11
2.9
11
90
0
55
37
0
18
43
1.51
42537--42596
22
2.9
22
76
19
65
41
3
18
36
1.67
42547--42584
19
2.1
18
90
5
58
44
2
21
31
1.66
44481--44956
242
2.0
242
99
0
943
30
13
23
33
1.92

Tables:   1

The End!