genome.fa.s12633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012633.1 Corchorus capsularis cultivar CVL-1 contig12654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92118

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066--1130	31	2.1	31	100	0	130	41	23	15	20	1.89
3762--3793	2	15.5	2	93	6	55	50	3	0	46	1.17
3935--3988	27	2.0	27	92	0	90	38	12	11	37	1.79
8375--8431	18	3.2	18	82	0	69	57	12	0	29	1.35
8542--8599	30	1.9	30	82	10	73	51	1	1	44	1.21
8845--8909	30	2.2	30	91	0	103	33	0	24	41	1.55
11141--11230	45	2.0	45	93	4	155	32	17	23	26	1.97
11676--11705	8	3.8	8	95	0	51	13	26	0	60	1.34
14095--14140	23	2.0	23	95	0	83	19	13	28	39	1.89
14424--14710	159	1.8	159	92	0	484	33	11	29	24	1.91
20087--20125	20	1.9	21	94	5	71	41	30	15	12	1.85
20029--20384	182	2.0	170	91	6	568	31	20	16	31	1.95
33993--34020	13	2.2	13	100	0	56	21	46	17	14	1.84
35686--35715	6	5.0	6	95	0	51	16	3	16	63	1.44
40739--40816	38	2.1	38	85	4	104	30	17	1	50	1.55
42723--42763	18	2.3	18	95	0	73	41	9	2	46	1.50
43770--43807	19	1.9	19	89	5	58	50	7	13	28	1.69
46370--46438	16	4.0	19	76	16	62	49	0	14	36	1.44
46385--46438	8	7.0	8	85	8	67	50	0	14	35	1.44
46393--46427	12	2.9	12	86	0	52	51	0	17	31	1.45
46612--46692	36	2.2	36	95	2	144	41	0	11	46	1.39
57408--57432	7	3.6	7	100	0	50	24	16	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60928--60966	1	39.0	1	94	0	60	5	0	0	94	0.29
60913--60962	23	2.2	23	88	0	73	8	2	4	86	0.78
63766--63799	13	2.5	14	90	9	61	44	23	5	26	1.76
64458--64524	28	2.4	28	100	0	134	37	8	17	35	1.82
76181--76444	85	3.3	75	89	8	259	25	18	17	39	1.92
76212--76449	85	2.8	85	98	0	449	24	18	17	40	1.91
84125--84183	31	1.9	31	89	0	91	32	20	5	42	1.74
86355--86890	22	24.6	22	66	16	145	35	14	10	39	1.80
86413--86458	23	2.0	22	87	4	65	32	10	4	52	1.56
86641--86725	23	3.7	23	84	1	100	37	14	7	41	1.73
86624--86725	45	2.3	44	81	6	107	39	12	7	40	1.72
86992--87047	22	2.6	22	83	5	71	35	8	7	48	1.62
86998--87051	22	2.5	22	84	3	74	35	9	7	48	1.63
87016--87137	22	5.5	22	74	3	75	32	14	10	41	1.81
87042--87141	44	2.3	44	80	3	112	35	15	11	39	1.82
87015--87143	66	2.0	66	81	3	152	33	14	10	41	1.79
86972--87137	88	1.9	88	80	5	192	33	13	10	42	1.78
87059--87141	22	3.8	21	77	3	85	37	13	10	38	1.79
87059--87189	22	5.8	23	75	8	83	36	15	9	38	1.79
87057--87208	22	6.9	22	70	16	82	36	15	9	38	1.80
87248--87387	22	6.4	21	72	14	88	35	19	7	37	1.81
87263--87387	44	2.8	44	75	11	112	36	19	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87423--87606	22	8.3	22	76	8	106	38	19	10	32	1.85
87445--87545	44	2.3	45	84	10	120	40	18	9	30	1.83
87477--87553	22	3.5	22	90	0	127	37	15	12	33	1.86
87474--87574	44	2.3	43	84	5	139	35	18	12	32	1.89
87950--88114	87	1.9	87	91	1	269	50	3	12	34	1.55

Tables:   1

The End!