genome.fa.s12634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012634.1 Corchorus capsularis cultivar CVL-1 contig12655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70459

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--97	2	49.0	2	97	2	187	0	49	0	50	1.00
1538--1562	12	2.1	12	100	0	50	24	16	52	8	1.70
2131--2264	67	2.0	67	100	0	268	34	17	37	10	1.85
7983--8022	20	2.0	20	90	4	64	65	5	30	0	1.14
15598--15648	26	2.0	26	88	0	75	27	23	7	41	1.82
24773--25050	141	2.0	142	87	2	407	33	15	12	38	1.86
27144--27214	24	2.9	24	93	4	115	21	16	22	39	1.92
31401--31429	13	2.1	14	93	6	51	20	20	10	48	1.79
33969--34021	21	2.6	21	87	3	72	28	32	32	7	1.85
38866--38902	18	2.1	18	100	0	74	29	27	5	37	1.79
45936--45961	2	13.0	2	100	0	52	50	0	0	50	1.00
45994--46065	32	2.3	31	80	7	74	16	19	15	48	1.81
49407--49472	34	1.9	34	96	0	123	37	22	19	19	1.94
49681--49755	27	2.8	27	85	0	96	45	26	12	16	1.82
50770--50820	24	2.1	26	79	17	65	58	5	11	23	1.55
51804--51864	27	2.2	28	83	13	74	8	16	1	73	1.14
51841--51891	15	3.6	14	82	17	54	0	21	0	78	0.75
51814--51885	18	4.2	16	72	20	58	4	19	1	75	1.05
51846--51891	13	3.4	13	82	8	56	0	21	0	78	0.76
57549--57607	23	2.5	24	77	22	70	28	42	23	5	1.75
57570--57680	16	6.9	16	75	8	109	33	36	19	9	1.85
57570--57680	32	3.5	31	83	4	134	33	36	19	9	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57549--57680	48	2.8	48	79	6	133	31	37	21	9	1.85
57789--57835	21	2.2	21	88	0	67	31	8	6	53	1.57
58307--58432	16	7.9	16	72	5	85	35	32	20	11	1.88
60343--60464	52	2.4	51	84	1	163	35	13	17	33	1.89
62125--62156	6	5.5	6	96	3	57	56	12	0	31	1.37
67073--67113	13	3.2	13	89	3	57	60	12	9	17	1.57

Tables:   1

The End!