Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012635.1 Corchorus capsularis cultivar CVL-1 contig12656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3177
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28


Found at i:526 original size:33 final size:33

Alignment explanation


    Indices: 450--560  Score: 136
    Period size: 33  Copynumber: 3.4  Consensus size: 33

        440 TAGACAAAGG

                                   *    *     
        450 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCC-AT

                **           *               
        483 GTCGTTTGGCCGGTTGTAGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

               *                              
        516 GTCACGTGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                        
        549 GTCGCGTGGCCG
          1 GTCGCGTGGCCG

        561 ATCTTGTGGC


Statistics
Matches: 66,  Mismatches: 10, Indels: 4
        0.82            0.12        0.05

Matches are distributed among these distances:
  32    3  0.05
  33   63  0.95

ACGTcount: A:0.10, C:0.27, G:0.41, T:0.23


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.