Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012636.1 Corchorus capsularis cultivar CVL-1 contig12657, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2491
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33


Found at i:1915 original size:16 final size:16

Alignment explanation


    Indices: 1894--1929  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1884 CTGGTCGAAA

                             
       1894 TTTTATTTTATTT-TAT
          1 TTTTATTTT-TTTATAT

                            
       1910 TTTTATTTTTTTATAT
          1 TTTTATTTTTTTATAT

                
       1926 TTTT
          1 TTTT

       1930 CGATATAACT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    3  0.16
  16   16  0.84

ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83


Consensus pattern (16 bp):   
TTTTATTTTTTTATAT
Done.