Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012637.1 Corchorus capsularis cultivar CVL-1 contig12658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10225

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2296--2348
13
3.6
14
80
14
63
83
0
16
0
0.66
2295--2348
19
3.1
16
78
19
54
83
0
16
0
0.65
2302--2348
19
2.6
18
83
12
60
80
0
19
0
0.70
2324--2383
26
2.2
26
82
11
68
73
1
16
8
1.16
7922--7960
13
2.9
14
80
7
53
38
5
15
41
1.69
8235--8280
19
2.3
20
88
3
76
73
6
0
19
1.04
8538--8566
13
2.2
13
100
0
58
34
0
20
44
1.52
9954--10027
22
3.2
22
72
10
76
29
24
18
27
1.98
9964--10043
25
3.3
25
72
10
85
23
25
22
28
1.99
9937--10045
47
2.3
47
95
0
191
28
25
20
25
1.99
10145--10204
22
2.5
25
76
15
72
26
25
21
26
2.00

Tables:   1

The End!