Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012638.1 Corchorus capsularis cultivar CVL-1 contig12659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30912

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1495--1548
14
3.6
14
82
9
63
81
0
18
0
0.69
1496--1549
18
3.2
18
80
17
62
83
0
16
0
0.65
3631--3704
27
2.7
27
87
0
94
16
12
27
44
1.82
3911--3976
34
1.9
34
96
0
123
19
19
22
37
1.94
7157--7270
20
5.9
20
75
13
87
50
7
22
19
1.71
7243--7340
35
2.8
35
86
6
144
47
8
21
22
1.76
7311--7358
20
2.3
21
82
7
62
50
4
27
18
1.65
7368--7667
22
14.9
19
72
17
116
50
5
20
23
1.69
7367--7436
19
3.5
20
86
7
99
50
5
22
21
1.70
7418--7490
12
5.5
13
79
8
51
60
6
8
24
1.50
7363--7436
20
3.8
20
82
3
98
52
5
21
20
1.66
7453--7478
3
8.7
3
100
0
52
69
0
0
30
0.89
7480--7714
107
2.2
108
81
6
300
50
4
21
23
1.66
7480--7725
22
11.4
22
71
13
136
50
4
21
23
1.67
7734--7818
39
2.2
38
84
10
111
56
2
27
14
1.50
12117--12150
11
3.2
10
84
15
50
50
17
2
29
1.61
13424--13503
39
2.1
39
97
0
151
21
27
23
27
1.99
15067--15114
14
3.0
17
82
17
75
31
6
6
56
1.49
15131--15165
17
2.0
18
94
5
63
25
5
5
62
1.40
15154--15214
15
3.8
15
69
23
52
39
8
11
40
1.71
15055--15233
65
2.8
64
91
6
285
35
7
12
44
1.71
16859--17106
38
6.4
37
75
13
167
33
19
16
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17174--17210
19
1.9
19
88
0
56
35
29
5
29
1.80
17132--17250
59
2.0
59
90
3
186
27
28
17
26
1.98
17191--17289
42
2.4
42
89
3
148
29
28
18
24
1.98
17191--17302
42
2.7
41
87
4
136
30
28
16
24
1.97
17231--17401
61
2.8
62
82
3
202
25
25
16
32
1.97
17299--17417
62
1.9
62
84
3
159
24
22
16
36
1.94
20946--21067
51
2.4
52
83
5
158
34
17
14
33
1.90
24563--24623
25
2.5
24
79
7
61
26
9
6
57
1.55
24580--24627
25
2.0
25
84
11
66
22
10
8
58
1.58
24889--24922
17
2.0
17
88
11
52
11
64
0
23
1.26
29315--29425
34
3.4
33
82
6
136
31
6
18
43
1.75
29399--29503
42
2.6
42
83
10
121
34
5
20
39
1.77
29551--29687
35
3.9
35
69
7
100
34
7
16
41
1.76
29659--29781
62
2.0
59
83
7
149
32
6
18
42
1.76
29876--30406
74
7.2
74
93
0
882
46
16
15
22
1.84
30085--30217
13
10.7
13
67
15
66
50
15
13
21
1.77

Tables:   1

The End!