Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001264.1 Corchorus capsularis cultivar CVL-1 contig01264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:532 original size:20 final size:21

Alignment explanation


    Indices: 488--532  Score: 51
    Period size: 20  Copynumber: 2.2  Consensus size: 21

        478 TCTTCAATTA

                          *      
        488 AAATAAAAAAAGTAGTAGAAT
          1 AAATAAAAAAAGTAATAGAAT

                                  
        509 -AATAAAATAAA-TAATA-AAT
          1 AAATAAAA-AAAGTAATAGAAT

                 
        528 AAATA
          1 AAATA

        533 GTAGGAATTC


Statistics
Matches: 21,  Mismatches: 1, Indels: 5
        0.78            0.04        0.19

Matches are distributed among these distances:
  19    3  0.14
  20   15  0.71
  21    3  0.14

ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22


Consensus pattern (21 bp):   
AAATAAAAAAAGTAATAGAAT
Done.