Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012640.1 Corchorus capsularis cultivar CVL-1 contig12661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1967
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:26 original size:11 final size:10

Alignment explanation


    Indices: 6--35  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

          1 TCTTC

                      
          6 TTTTCTTTTT
          1 TTTTCTTTTT

                 *    
         16 TTTTCCTTTT
          1 TTTTCTTTTT

                      
         26 TTTTCTTTTT
          1 TTTTCTTTTT

         36 ATTCCCATCG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87


Consensus pattern (10 bp):   
TTTTCTTTTT

Found at i:296 original size:15 final size:15

Alignment explanation


    Indices: 263--315  Score: 58
    Period size: 14  Copynumber: 3.7  Consensus size: 15

        253 AAAGGCGATC

                            
        263 TTTTGAAAACTCA--T
          1 TTTTGAAAA-TCATTT

                           
        277 TTTTGAAAATCATTT
          1 TTTTGAAAATCATTT

                     *     
        292 TTTTG-AAAGCATTT
          1 TTTTGAAAATCATTT

             *        
        306 TCTTGAAAAT
          1 TTTTGAAAAT

        316 TTTTTCGAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 5
        0.80            0.07        0.12

Matches are distributed among these distances:
  13    3  0.09
  14   21  0.64
  15    9  0.27

ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47


Consensus pattern (15 bp):   
TTTTGAAAATCATTT
Done.