Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012641.1 Corchorus capsularis cultivar CVL-1 contig12662, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13461

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
564--592
2
14.5
2
100
0
58
51
0
0
48
1.00
1165--1226
6
10.5
6
77
10
56
32
1
17
48
1.57
9147--9253
53
2.0
55
87
3
155
33
18
15
31
1.93
10627--10654
3
9.3
3
100
0
56
64
0
0
35
0.94
10653--10742
3
30.0
3
93
0
117
40
1
0
58
1.05
11381--11603
111
2.0
111
95
0
403
37
12
16
34
1.86
12862--12906
21
2.1
21
91
0
72
17
35
11
35
1.86
13122--13258
32
4.2
32
82
5
159
10
40
37
11
1.77
13122--13258
65
2.1
64
83
4
168
10
40
37
11
1.77
13348--13429
33
2.5
33
79
0
101
14
43
30
10
1.80

Tables:   1

The End!