Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012643.1 Corchorus capsularis cultivar CVL-1 contig12664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7707
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:5012 original size:13 final size:13

Alignment explanation


    Indices: 4994--5022  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       4984 CAATTTTTTC

                         
       4994 TTACATAAAACCG
          1 TTACATAAAACCG

                         
       5007 TTACATAAAACCG
          1 TTACATAAAACCG

               
       5020 TTA
          1 TTA

       5023 GTTGCCATAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28


Consensus pattern (13 bp):   
TTACATAAAACCG

Found at i:5467 original size:2 final size:2

Alignment explanation


    Indices: 5460--5497  Score: 58
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       5450 ATTTTGTTTT

                        *                                           
       5460 TA TA TA TA AA TA TA TA TCA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T

       5498 TTATGAGTGT


Statistics
Matches: 33,  Mismatches: 2, Indels: 2
        0.89            0.05        0.05

Matches are distributed among these distances:
   2   31  0.94
   3    2  0.06

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.