Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012647.1 Corchorus capsularis cultivar CVL-1 contig12668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78982

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55--1128
408
2.7
394
82
7
1228
35
13
17
33
1.89
55--1128
200
5.3
199
80
7
1143
35
13
17
33
1.89
7706--7773
33
2.1
33
100
0
136
32
7
5
54
1.52
11244--11284
6
6.8
6
79
20
50
48
0
17
34
1.47
11562--11616
23
2.3
24
84
9
69
32
25
3
38
1.73
17183--17233
21
2.7
19
85
11
61
76
17
3
1
1.03
20315--20373
16
3.8
16
76
10
59
6
11
27
54
1.62
20137--20576
238
1.8
238
93
0
756
25
12
16
45
1.83
30715--30765
18
2.8
18
84
0
66
29
0
13
56
1.38
30886--30929
18
2.4
18
81
7
54
38
11
38
11
1.77
32699--32753
17
3.2
17
84
0
74
32
5
14
47
1.67
34413--34445
2
17.0
2
93
6
59
51
0
0
48
1.00
35262--35298
16
2.2
17
86
13
51
64
0
10
24
1.25
41789--41898
33
3.4
32
76
7
107
32
16
16
34
1.91
48459--48554
6
15.8
6
68
28
53
28
50
18
3
1.62
48469--48510
16
2.6
16
88
0
57
33
45
16
4
1.69
48499--48554
16
3.4
16
90
2
85
26
51
19
1
1.57
49294--49399
6
16.2
6
73
23
81
33
44
17
3
1.67
49296--49347
17
3.1
17
94
0
86
28
50
19
1
1.58
49294--49348
23
2.4
23
90
6
85
30
47
20
1
1.60
49337--49395
16
3.8
16
93
4
102
38
40
15
5
1.69
49319--49409
31
2.8
32
77
9
96
32
43
17
5
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50623--50671
17
2.9
16
76
8
53
79
14
6
0
0.91
50622--50679
22
2.7
22
77
15
59
79
13
6
0
0.93
52029--52059
6
5.2
6
92
0
53
45
35
3
16
1.63
52058--52248
38
5.0
38
97
0
337
21
37
18
21
1.94
65317--65761
219
2.0
219
99
0
881
23
17
16
42
1.88
74240--74331
45
2.0
46
95
4
168
30
16
15
38
1.89
74553--74579
5
5.4
5
100
0
54
81
0
18
0
0.69
77860--77912
27
2.0
27
85
7
74
39
9
1
49
1.46
78439--78476
20
1.9
20
88
0
58
26
28
26
18
1.98

Tables:   1

The End!