Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012648.1 Corchorus capsularis cultivar CVL-1 contig12669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21681

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4460--4493
5
6.8
5
100
0
68
0
0
17
82
0.67
5235--5321
44
2.0
43
84
6
113
29
27
16
26
1.96
5509--5592
22
3.7
22
89
6
132
25
36
21
16
1.94
5748--5789
22
1.9
22
90
0
66
23
35
21
19
1.96
9401--9487
44
2.0
43
84
6
113
29
27
16
26
1.96
9675--9763
22
4.0
22
89
5
133
24
38
21
15
1.92
9914--9955
22
1.9
22
90
0
66
23
35
21
19
1.96
16605--16645
7
5.5
8
83
13
52
12
2
29
56
1.49
16601--16646
22
2.1
22
100
0
92
15
4
28
52
1.61
16605--16645
15
2.8
15
82
14
50
12
2
29
56
1.49
16779--16804
13
2.0
13
100
0
52
23
15
30
30
1.95
16815--16877
31
2.0
31
96
0
117
33
23
22
20
1.97

Tables:   1

The End!