Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001265.1 Corchorus capsularis cultivar CVL-1 contig01265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33


Found at i:51 original size:15 final size:15

Alignment explanation


    Indices: 31--66  Score: 65
    Period size: 15  Copynumber: 2.5  Consensus size: 15

         21 AGACGAATTT

                           
         31 ACAAAAACGATATTA
          1 ACAAAAACGATATTA

                           
         46 ACAAAAACGATATTA
          1 ACAAAAACGATATTA

                   
         61 A-AAAAA
          1 ACAAAAA

         67 AAGAGTTGTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  14    5  0.24
  15   16  0.76

ACGTcount: A:0.67, C:0.11, G:0.06, T:0.17


Consensus pattern (15 bp):   
ACAAAAACGATATTA

Found at i:375 original size:26 final size:26

Alignment explanation


    Indices: 339--390  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        329 CTTTTGTTTC

                                      
        339 GTCTTTGACTCTGAATAAAGAGATAA
          1 GTCTTTGACTCTGAATAAAGAGATAA

                                      
        365 GTCTTTGACTCTGAATAAAGAGATAA
          1 GTCTTTGACTCTGAATAAAGAGATAA

        391 AATAAAGACA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31


Consensus pattern (26 bp):   
GTCTTTGACTCTGAATAAAGAGATAA
Done.