Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012652.1 Corchorus capsularis cultivar CVL-1 contig12673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49642

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2025--2054
15
1.9
16
93
6
53
46
33
13
6
1.69
2319--2437
32
3.8
32
86
4
145
41
36
8
14
1.76
2336--2427
15
5.9
15
78
8
94
40
35
6
17
1.75
2329--2453
16
7.8
16
76
10
121
40
36
8
14
1.77
6290--6357
30
2.2
31
89
2
102
30
19
4
45
1.70
6382--6441
26
2.3
27
94
2
104
36
8
0
55
1.30
6382--6448
26
2.5
25
90
7
89
37
7
1
53
1.38
7037--7074
19
2.0
20
85
15
53
28
5
2
63
1.30
8302--8359
22
2.6
23
78
5
66
36
8
17
37
1.80
8400--8464
22
3.0
22
95
0
112
33
15
16
33
1.91
8470--8518
22
2.2
22
89
7
73
22
4
26
46
1.69
8639--8949
44
7.0
43
68
15
132
41
9
14
34
1.78
8596--8924
22
14.7
22
68
17
78
40
9
15
34
1.80
8732--8924
22
8.7
22
72
10
97
41
10
13
34
1.79
9030--9303
22
12.5
22
74
8
191
40
8
15
35
1.78
9180--9305
68
1.9
67
83
1
162
39
7
13
38
1.74
9202--9316
22
5.1
22
78
8
97
38
6
14
40
1.73
9470--9513
22
2.0
21
82
4
52
59
6
9
25
1.53
18087--18118
11
2.9
11
100
0
64
0
28
0
71
0.86
18161--18187
13
2.1
13
100
0
54
0
29
0
70
0.88
20795--20831
18
2.1
18
89
0
56
72
5
5
16
1.21
33037--33298
107
2.5
105
91
3
404
40
8
9
42
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34931--35026
32
3.2
32
61
24
82
38
12
27
21
1.90
34921--35035
57
2.1
57
86
3
180
39
13
26
20
1.90
38042--38070
3
9.7
3
100
0
58
34
0
0
65
0.93
39067--39110
21
2.0
22
91
8
72
63
4
20
11
1.44
43146--43269
40
3.2
40
60
17
96
50
0
12
37
1.41
43129--43375
78
3.2
78
95
1
433
50
0
13
35
1.46
45979--46033
17
3.4
17
68
14
53
36
7
32
23
1.82
45977--46037
31
2.0
31
96
0
113
32
8
32
26
1.86
48012--48049
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!