Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012654.1 Corchorus capsularis cultivar CVL-1 contig12675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97057

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
588--649
23
2.6
22
78
19
54
14
8
20
56
1.64
1130--1405
105
2.6
104
86
4
392
40
11
16
31
1.84
1132--1404
35
7.8
34
90
4
352
39
11
16
31
1.84
4553--4589
19
2.0
19
89
5
58
54
18
0
27
1.44
9702--9746
20
2.2
21
88
8
74
51
6
22
20
1.70
9736--9974
92
2.6
92
98
0
460
37
16
20
26
1.93
14845--14940
47
2.0
47
91
0
156
67
13
8
10
1.41
14905--14947
20
2.2
19
88
12
61
79
2
6
11
1.02
15310--15347
6
6.3
6
100
0
76
15
0
68
15
1.22
16558--16610
10
5.6
10
70
20
51
11
20
28
39
1.87
16551--16604
27
2.0
27
100
0
108
14
22
29
33
1.94
19045--19087
21
2.0
21
95
0
77
23
32
9
34
1.87
20337--20406
36
1.9
37
94
2
124
18
30
8
42
1.80
20490--20553
3
20.7
3
90
6
101
32
0
1
65
1.02
22046--22109
27
2.3
28
81
10
78
43
6
4
45
1.50
23460--23648
22
8.6
22
72
12
111
38
11
12
37
1.79
23460--23648
44
4.3
44
74
7
141
38
11
12
37
1.79
23467--23652
66
2.8
66
79
8
202
40
11
11
36
1.78
23619--23677
29
2.0
29
83
0
73
44
11
6
37
1.68
23781--23830
21
2.3
22
86
10
68
46
14
10
30
1.77
23862--23948
22
4.0
22
82
7
97
34
9
21
34
1.86
23876--23965
44
2.0
44
89
0
135
32
11
20
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23876--23965
22
4.1
22
79
0
90
32
11
20
36
1.87
23989--24050
22
2.8
22
77
0
61
35
11
17
35
1.86
24138--24189
22
2.4
22
80
0
59
38
7
13
40
1.73
24733--24777
21
2.1
22
87
4
65
15
28
8
46
1.76
24968--25046
32
2.5
32
89
0
122
18
31
31
17
1.95
42293--42322
14
2.1
14
93
0
51
50
10
6
33
1.62
53731--53785
17
3.5
17
69
23
57
58
10
5
25
1.53
55234--55360
22
5.8
22
74
9
107
40
12
8
38
1.74
55345--55402
20
2.7
21
84
10
64
34
12
6
46
1.68
59866--60082
120
1.8
120
89
2
346
21
20
25
32
1.98
59964--60275
135
2.3
135
91
2
493
19
27
22
30
1.98
61826--62236
154
2.7
155
83
3
506
33
21
14
30
1.94
65389--65417
15
1.9
15
100
0
58
55
0
20
24
1.44
67181--67223
2
21.5
2
100
0
86
48
0
0
51
1.00
77899--77943
23
1.9
24
90
4
74
15
31
6
46
1.72
82440--82495
27
2.0
27
86
3
76
25
10
7
57
1.58
82613--82680
23
2.7
26
84
8
97
29
11
5
52
1.61
84621--84661
5
8.4
5
89
5
66
17
2
0
80
0.82
95645--95669
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!