genome.fa.s12658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012658.1 Corchorus capsularis cultivar CVL-1 contig12679, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43911

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581--605	2	12.5	2	100	0	50	52	0	0	48	1.00
4063--4098	19	1.9	18	88	5	54	41	2	22	33	1.68
5379--5412	16	2.2	16	89	5	52	29	2	8	58	1.43
8636--8669	6	5.5	6	93	6	59	55	14	0	29	1.40
8641--8682	19	2.2	19	83	8	50	59	11	0	28	1.33
8666--8700	13	2.7	13	83	16	54	71	5	2	20	1.19
14953--14986	6	5.5	6	89	6	50	52	11	0	35	1.38
14983--15017	13	2.7	13	90	0	61	68	8	2	20	1.29
18294--18320	14	1.9	14	100	0	54	29	29	0	40	1.57
18308--18677	35	10.6	35	94	0	623	32	18	11	38	1.86
19450--19505	28	2.0	28	86	6	78	0	28	0	71	0.86
20563--20614	14	3.8	14	89	5	88	13	34	7	44	1.72
20556--20615	27	2.2	27	100	0	120	15	33	6	45	1.72
20556--20615	14	4.5	13	85	8	84	15	33	6	45	1.72
27847--27893	24	2.0	23	84	12	60	14	12	4	68	1.36
30746--30779	16	2.2	16	89	5	52	29	2	8	58	1.43
33893--33948	27	2.1	27	86	6	78	21	3	12	62	1.45
34202--34255	26	2.0	27	85	3	74	29	16	5	48	1.69
38453--38504	14	3.6	14	71	19	52	17	19	3	59	1.52
38436--38508	30	2.5	29	91	4	119	15	19	4	61	1.49
38453--38749	44	7.2	43	78	11	230	19	20	4	55	1.59
38485--38634	22	7.0	22	83	11	186	20	20	4	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38611--38687	13	5.4	15	75	13	56	22	18	6	53	1.67
38569--38687	57	2.1	55	87	4	166	21	19	5	52	1.66
38566--38709	77	1.9	75	87	11	213	21	18	5	54	1.64
38478--38860	40	9.7	39	73	17	140	19	21	3	55	1.58
38742--38856	36	3.5	34	80	13	118	18	24	1	55	1.52
38940--39068	26	4.9	26	77	11	129	17	21	6	54	1.66
38938--39068	52	2.5	53	85	5	185	16	22	6	54	1.66
39199--39232	16	2.2	16	89	5	52	58	8	2	29	1.43
40518--40553	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!