Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012661.1 Corchorus capsularis cultivar CVL-1 contig12682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2479
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37


Found at i:1930 original size:28 final size:27

Alignment explanation


    Indices: 1897--1950  Score: 81
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1887 ATTACTATGC

                 *                     
       1897 TAAAATTTCTAAGAATGCAAGGTTACT
          1 TAAAAATTCTAAGAATGCAAGGTTACT

                             **        
       1924 TAAAAATTCTAAGAATGTGAGGTTACT
          1 TAAAAATTCTAAGAATGCAAGGTTACT

       1951 AAATTTATGT


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33


Consensus pattern (27 bp):   
TAAAAATTCTAAGAATGCAAGGTTACT
Done.