genome.fa.s12663.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012663.1 Corchorus capsularis cultivar CVL-1 contig12684, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58070

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350--380	16	1.9	16	93	0	53	54	0	9	35	1.33
1765--1867	53	1.9	53	96	0	188	39	6	11	41	1.68
2601--2733	16	8.4	16	79	5	144	7	19	34	38	1.80
2977--3058	42	2.0	42	92	0	137	37	4	19	37	1.73
3577--3664	16	5.4	16	78	8	97	10	18	35	36	1.84
5344--5441	49	2.0	49	100	0	196	32	12	24	30	1.92
5579--5604	5	5.2	5	100	0	52	76	0	0	23	0.78
16334--16391	29	2.0	30	86	3	82	34	15	24	25	1.95
18253--18293	15	2.7	15	92	0	73	21	31	0	46	1.52
18253--18317	30	2.2	30	82	0	76	27	29	4	38	1.77
18392--18494	31	3.4	30	67	22	81	33	22	17	26	1.96
18529--18693	31	5.5	29	68	16	113	26	20	18	34	1.96
18529--18689	60	2.7	60	93	1	270	26	19	18	35	1.95
18560--18658	29	3.4	28	69	15	83	28	20	17	34	1.95
20311--20356	18	2.7	18	83	10	60	26	45	15	13	1.82
20458--20507	16	3.1	16	88	0	73	32	38	20	10	1.85
20442--20507	32	2.1	31	86	8	89	33	37	19	9	1.84
20612--20659	21	2.3	21	82	13	71	27	8	8	56	1.57
21104--21252	16	9.4	15	76	10	95	34	36	21	8	1.83
21145--21253	9	13.6	8	71	24	63	35	37	20	6	1.78
21119--21252	32	4.2	32	83	2	155	34	35	21	8	1.83
21131--21254	16	7.8	16	80	5	135	36	35	20	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22442--22476	2	17.5	2	100	0	70	51	0	0	48	1.00
24641--24677	2	19.0	2	94	5	67	51	0	0	48	1.00
24641--24674	17	2.0	17	100	0	68	52	0	0	47	1.00
25535--25565	11	2.8	11	95	0	53	0	3	19	77	0.90
31716--31745	14	2.1	14	100	0	60	33	6	6	53	1.53
31719--31766	18	2.5	20	70	10	55	41	8	4	45	1.53
32662--32703	14	2.8	16	82	10	52	38	11	9	40	1.75
33239--33321	16	5.1	16	71	12	53	50	31	10	7	1.64
33910--33968	21	2.7	22	76	5	66	37	6	11	44	1.68
34125--34231	22	4.9	22	76	13	105	34	8	14	42	1.77
34113--34250	44	3.2	44	85	2	172	36	9	14	39	1.78
34175--34295	64	1.9	65	85	1	172	36	8	14	40	1.77
34113--34402	22	13.2	22	67	14	75	35	8	15	41	1.78
34414--34480	34	2.0	34	88	5	100	32	13	19	34	1.91
34452--34817	22	16.6	22	69	10	115	37	9	15	37	1.79
34712--34770	21	2.7	22	84	5	84	40	8	8	42	1.66
37205--37230	12	2.2	12	100	0	52	15	34	19	30	1.93
37754--37789	18	2.0	18	100	0	72	38	5	5	50	1.49
38570--38620	15	3.4	15	78	5	59	33	15	7	43	1.76
41647--41709	32	2.0	32	87	6	92	30	11	17	41	1.84
43414--43454	16	2.8	14	85	10	55	68	0	26	4	1.10
43414--43454	7	5.6	7	83	11	55	68	0	26	4	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44761--44840	21	3.7	22	75	21	80	20	17	7	55	1.66
44779--45138	42	8.2	42	74	13	228	19	20	5	54	1.64
44878--45165	22	13.5	22	71	16	119	19	19	5	54	1.64
44980--45035	14	4.0	14	70	9	51	16	23	5	55	1.61
45416--45846	55	7.8	55	92	0	700	24	18	7	49	1.72
46808--46913	50	2.1	49	78	11	110	34	14	12	38	1.83
49759--49815	13	4.2	13	70	12	51	54	15	7	22	1.65
49916--50020	27	3.9	27	91	0	156	40	22	20	16	1.91
53642--53674	13	2.8	12	90	9	50	30	0	15	54	1.41
53642--53674	6	5.5	6	89	10	50	30	0	15	54	1.41
54005--54106	40	2.5	39	80	13	100	26	9	3	59	1.46

Tables:   1

The End!